Sebastian Kmiecik

17 papers Journal 17
YearRankTypeTitle / Venue / Authors
2024 J jnl
Structure prediction of linear and cyclic peptides using CABS-flex.
Briefings Bioinform.
Aleksandra E. Badaczewska-Dawid, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik
2022 J jnl
A3D database: structure-based predictions of protein aggregation for the human proteome.
Bioinform.
Aleksandra E. Badaczewska-Dawid, Javier Garcia-Pardo, Aleksander Kuriata, Jordi Pujols, Salvador Ventura, Sebastian Kmiecik
2022 J jnl
MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes.
Nucleic Acids Res.
Aleksandra E. Badaczewska-Dawid, Chandran Nithin, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik
2021 J jnl
Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement.
Briefings Bioinform.
Aleksandra E. Badaczewska-Dawid, Sebastian Kmiecik, Michal Kolinski
2019 J jnl
Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility.
Nucleic Acids Res.
Aleksander Kuriata, Valentin Iglesias, Jordi Pujols, Mateusz Kurcinski, Sebastian Kmiecik, Salvador Ventura
2019 J jnl
Aggrescan3D standalone package for structure-based prediction of protein aggregation properties.
Bioinform.
Aleksander Kuriata, Valentin Iglesias, Mateusz Kurcinski, Salvador Ventura, Sebastian Kmiecik
2019 J jnl
CABS-dock standalone: a toolbox for flexible protein-peptide docking.
Bioinform.
Mateusz Kurcinski, Maciej Pawel Ciemny, Tymoteusz Oleniecki, Aleksander Kuriata, Aleksandra E. Badaczewska-Dawid, Andrzej Kolinski, Sebastian Kmiecik
2019 J jnl
CABS-flex standalone: a simulation environment for fast modeling of protein flexibility.
Bioinform.
Mateusz Kurcinski, Tymoteusz Oleniecki, Maciej Pawel Ciemny, Aleksander Kuriata, Andrzej Kolinski, Sebastian Kmiecik
2019 J jnl
Protein-peptide docking using CABS-dock and contact information.
Briefings Bioinform.
Maciej Blaszczyk, Maciej Pawel Ciemny, Andrzej Kolinski, Mateusz Kurcinski, Sebastian Kmiecik
2018 J jnl
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures.
Nucleic Acids Res.
Aleksander Kuriata, Aleksandra Maria Gierut, Tymoteusz Oleniecki, Maciej Pawel Ciemny, Andrzej Kolinski, Mateusz Kurcinski, Sebastian Kmiecik
2016 J jnl
Coarse-Grained Simulations of Membrane Insertion and Folding of Small Helical Proteins Using the CABS Model.
J. Chem. Inf. Model.
Wojciech Pulawski, Michal Jamróz, Michal Kolinski, Andrzej Kolinski, Sebastian Kmiecik
2015 J jnl
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures.
Nucleic Acids Res.
Rafael Zambrano, Michal Jamróz, Agata Szczasiuk, Jordi Pujols, Sebastian Kmiecik, Salvador Ventura
2015 J jnl
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site.
Nucleic Acids Res.
Mateusz Kurcinski, Michal Jamróz, Maciej Blaszczyk, Andrzej Kolinski, Sebastian Kmiecik
2014 J jnl
CABS-flex predictions of protein flexibility compared with NMR ensembles.
Bioinform.
Michal Jamróz, Andrzej Kolinski, Sebastian Kmiecik
2013 J jnl
CABS-flex: server for fast simulation of protein structure fluctuations.
Nucleic Acids Res.
Michal Jamróz, Andrzej Kolinski, Sebastian Kmiecik
2013 J jnl
CABS-fold: server for the
Nucleic Acids Res.
Maciej Blaszczyk, Michal Jamróz, Sebastian Kmiecik, Andrzej Kolinski
2007 J jnl
Backbone building from quadrilaterals: A fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates.
J. Comput. Chem.
Dominik Gront, Sebastian Kmiecik, Andrzej Kolinski