Sebastian Bonhoeffer

24 papers C 1Journal 22Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
estimateR: an R package to estimate and monitor the effective reproductive number.
BMC Bioinform.
Jérémie Scire, Jana S. Huisman, Ana Grosu, Daniel C. Angst, Adrian Lison, Jinzhou Li, Marloes H. Maathuis, Sebastian Bonhoeffer, Tanja Stadler
2022 J jnl
Epidemiological and evolutionary consequences of different types of CRISPR-Cas systems.
PLoS Comput. Biol.
Hélène Chabas, Viktor Müller, Sebastian Bonhoeffer, Roland R. Regoes
2021 J jnl
Correction: Practical considerations for measuring the effective reproductive number, Rt.
PLoS Comput. Biol.
Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherratt, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey
2021 J jnl
Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches.
PLoS Comput. Biol.
Judith A. Bouman, Julien Riou, Sebastian Bonhoeffer, Roland R. Regoes
2020 J jnl
Practical considerations for measuring the effective reproductive number, Rt.
PLoS Comput. Biol.
Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherratt, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey
2019 J jnl
A time resolved clustering method revealing longterm structures and their short-term internal dynamics.
CoRR
Jonas I. Liechti, Sebastian Bonhoeffer
2018 J jnl
Assessing the public health impact of tolerance-based therapies with mathematical models.
PLoS Comput. Biol.
Nathanaël Hozé, Sebastian Bonhoeffer, Roland R. Regoes
2017 J jnl
Clonal dominance and transplantation dynamics in hematopoietic stem cell compartments.
PLoS Comput. Biol.
Peter Ashcroft, Markus G. Manz, Sebastian Bonhoeffer
2017 J jnl
Host population structure impedes reversion to drug sensitivity after discontinuation of treatment.
PLoS Comput. Biol.
Jonas Liechti, Gabriel E. Leventhal, Sebastian Bonhoeffer
2017 J jnl
Modeling antibiotic treatment in hospitals: A systematic approach shows benefits of combination therapy over cycling, mixing, and mono-drug therapies.
PLoS Comput. Biol.
Burcu Tepekule, Hildegard Uecker, Isabel Derungs, Antoine Frénoy, Sebastian Bonhoeffer
2017 J jnl
Short-term activity cycles impede information transmission in ant colonies.
PLoS Comput. Biol.
Thomas O. Richardson, Jonas Liechti, Nathalie Stroeymeyt, Sebastian Bonhoeffer, Laurent Keller
2016 J jnl
The Role of Adherence and Retreatment in
PLoS Comput. Biol.
Dominique Cadosch, Pia Abel zur Wiesch, Roger D. Kouyos, Sebastian Bonhoeffer
2015 J jnl
From "What Is?" to "What Isn't?" Computational Biology.
PLoS Comput. Biol.
Ruth Nussinov, Sebastian Bonhoeffer, Jason A. Papin, Olaf Sporns
2015 J jnl
Spatial Heterogeneity in Drug Concentrations Can Facilitate the Emergence of Resistance to Cancer Therapy.
PLoS Comput. Biol.
Feng Fu, Martin A. Nowak, Sebastian Bonhoeffer
2014 J jnl
Inference of Epidemiological Dynamics Based on Simulated Phylogenies Using Birth-Death and Coalescent Models.
PLoS Comput. Biol.
Veronika Boskova, Sebastian Bonhoeffer, Tanja Stadler
2012 J jnl
Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase.
PLoS Comput. Biol.
Rafal Mostowy, Roger D. Kouyos, Ilka Hoof, Trevor Hinkley, Mojgan Haddad, Jeannette M. Whitcomb, Christos J. Petropoulos, Can Kesmir, Sebastian Bonhoeffer
2012 J jnl
Evolution of Stress Response in the Face of Unreliable Environmental Signals.
PLoS Comput. Biol.
Markus Arnoldini, Rafal Mostowy, Sebastian Bonhoeffer, Martin Ackermann
2012 J jnl
Inferring Epidemic Contact Structure from Phylogenetic Trees.
PLoS Comput. Biol.
Gabriel E. Leventhal, Roger D. Kouyos, Tanja Stadler, Viktor von Wyl, Sabine Yerly, Jürg Böni, Cristina Cellerai, Thomas Klimkait, Huldrych F. Günthard, Sebastian Bonhoeffer
2011 J jnl
Informed Switching Strongly Decreases the Prevalence of Antibiotic Resistance in Hospital Wards.
PLoS Comput. Biol.
Roger D. Kouyos, Pia Abel zur Wiesch, Sebastian Bonhoeffer
2010 C conf
Evolution of Recombination on an HIV-1 Derived Fitness Landscape.
ALIFE
João Martins, Roger D. Kouyos, Trevor Hinkley, Colombe Chappey, Mojgan Haddad, Jeannette M. Whitcomb, Christos J. Petropoulos, Sebastian Bonhoeffer
2009 J jnl
Predicting the Evolution of Sex on Complex Fitness Landscapes.
PLoS Comput. Biol.
Dusan Misevic, Roger D. Kouyos, Sebastian Bonhoeffer
2009 J jnl
Red Queen Dynamics with Non-Standard Fitness Interactions.
PLoS Comput. Biol.
Jan Engelstädter, Sebastian Bonhoeffer
2006 J jnl
High Epitope Expression Levels Increase Competition between T Cells.
PLoS Comput. Biol.
Almut Scherer, Marcel Salathé, Sebastian Bonhoeffer
1995 — conf
Spatial Games and Evolution of Cooperation.
ECAL
Robert M. May, Sebastian Bonhoeffer, Martin A. Nowak