Scott M. Dudek

40 papers A 3B 1C 1Misc 9Journal 17Unranked 9

Year	Rank	Type	Title / Venue / Authors
2019	—	`conf`	Neural network-based multiomics data integration in Alzheimer's disease. GECCO (Companion) Pankhuri Singhal, Shefali S. Verma, Scott M. Dudek, Marylyn D. Ritchie
2018	J	`jnl`	A simulation study investigating power estimates in phenome-wide association studies. BMC Bioinform. Anurag Verma, Yukiko Bradford, Scott M. Dudek, Anastasia Lucas, Shefali S. Verma, Sarah A. Pendergrass, Marylyn D. Ritchie
2018	J	`jnl`	Collective feature selection to identify crucial epistatic variants. BioData Min. Shefali S. Verma, Anastasia Lucas, Xinyuan Zhang, Yogasudha Veturi, Scott M. Dudek, Binglan Li, Ruowang Li, Ryan J. Urbanowicz, Jason H. Moore, Dokyoon Kim, Marylyn D. Ritchie
2017	J	`jnl`	Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals. BioData Min. Emily Rose Holzinger, Shefali S. Verma, Carrie Colleen Buchanan Moore, Molly A. Hall, Rishika De, Diane Gilbert-Diamond, Matthew B. Lanktree, Nathan Pankratz, Antoinette Amuzu, Amber Burt, Caroline Dale, Scott M. Dudek, Clement E. Furlong, Tom R. Gaunt, Daniel Seung Kim, Helene Riess, Suthesh Sivapalaratnam, Vinicius Tragante, Erik P. A. van Iperen, Ariel Brautbar, David S. Carrell, David R. Crosslin, Gail P. Jarvik, Helena Kuivaniemi, Iftikhar J. Kullo, Eric B. Larson, Laura J. Rasmussen-Torvik, Gerard Tromp, Jens Baumert, Karen J. Cruickshanks, Martin Farrall, Aroon D. Hingorani, G. K. Hovingh, Marcus E. Kleber, Barbara E. Klein, Ronald Klein, Wolfgang Koenig, Leslie A. Lange, Winfried März, Kari E. North, N. Charlotte Onland-Moret, Alex P. Reiner, Philippa J. Talmud, Yvonne T. van der Schouw, James G. Wilson, Mika Kivimäki, Meena Kumari, Jason H. Moore, Fotios Drenos, Folkert W. Asselbergs, Brendan J. Keating, Marylyn D. Ritchie
2017	J	`jnl`	Using knowledge-driven genomic interactions for multi-omics data analysis: metadimensional models for predicting clinical outcomes in ovarian carcinoma. J. Am. Medical Informatics Assoc. Dokyoon Kim, Ruowang Li, Anastasia Lucas, Shefali S. Verma, Scott M. Dudek, Marylyn D. Ritchie
2016	J	`jnl`	Identification of genetic interaction networks via an evolutionary algorithm evolved Bayesian network. BioData Min. Ruowang Li, Scott M. Dudek, Dokyoon Kim, Molly A. Hall, Yukiko Bradford, Peggy L. Peissig, Murray H. Brilliant, James G. Linneman, Catherine A. McCarty, Le Bao, Marylyn D. Ritchie
2016	Misc	`conf`	Integrating Clinical Laboratory Measures and ICD-9 Code Diagnoses in Phenome-Wide Association Studies. PSB Anurag Verma, Joseph B. Leader, Shefali S. Verma, Alex T. Frase, John R. Wallace, Scott M. Dudek, Daniel R. Lavage, Cristopher V. Van Hout, Frederick E. Dewey, John Penn, Alexander E. Lopez, John D. Overton, David J. Carey, David H. Ledbetter, H. Lester Kirchner, Marylyn D. Ritchie, Sarah A. Pendergrass
2016	J	`jnl`	Pathway analysis by randomization incorporating structure - PARIS: an update. Bioinform. Mariusz Butkiewicz, Jessica Cooke Bailey, Alex T. Frase, Scott M. Dudek, Brian L. Yaspan, Marylyn D. Ritchie, Sarah A. Pendergrass, Jonathan L. Haines
2015	Misc	`conf`	Binning Somatic Mutations Based on Biological Knowledge for Predicting Survival: An Application in Renal Cell Carcinoma. Pacific Symposium on Biocomputing Dokyoon Kim, Ruowang Li, Scott M. Dudek, John R. Wallace, Marylyn D. Ritchie
2015	J	`jnl`	Predicting censored survival data based on the interactions between meta-dimensional omics data in breast cancer. J. Biomed. Informatics Dokyoon Kim, Ruowang Li, Scott M. Dudek, Marylyn D. Ritchie
2014	J	`jnl`	ATHENA: the analysis tool for heritable and environmental network associations. Bioinform. Emily Rose Holzinger, Scott M. Dudek, Alex T. Frase, Sarah A. Pendergrass, Marylyn D. Ritchie
2014	B	`conf`	An integrated analysis of genome-wide DNA methylation and genetic variants underlying etoposide-induced cytotoxicity in European and African populations. EvoApplications Ruowang Li, Do Kyoon Kim, Scott M. Dudek, Marylyn D. Ritchie
2014	J	`jnl`	Knowledge-driven genomic interactions: an application in ovarian cancer. BioData Min. Do Kyoon Kim, Ruowang Li, Scott M. Dudek, Alex T. Frase, Sarah A. Pendergrass, Marylyn D. Ritchie
2013	Misc	`conf`	ATHENA: A Tool for Meta-Dimensional Analysis Applied to Genotypes and Gene Expression Data to Predict HDL Cholesterol Levels. Pacific Symposium on Biocomputing Emily Rose Holzinger, Scott M. Dudek, Alex T. Frase, Ronald M. Krauss, Marisa Wong Medina, Marylyn D. Ritchie
2013	J	`jnl`	ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network. BioData Min. Dokyoon Kim, Ruowang Li, Scott M. Dudek, Marylyn D. Ritchie
2013	—	`conf`	Evaluation of Parameter Contribution to Neural Network Size and Fitness in ATHENA for Genetic Analysis. GPTP Ruowang Li, Emily Rose Holzinger, Scott M. Dudek, Marylyn D. Ritchie
2013	Misc	`conf`	Next-Generation Analysis of Cataracts: Determining Knowledge Driven Gene-Gene Interactions Using Biofilter, and Gene-Environment Interactions Using the PhenX Toolkit. Pacific Symposium on Biocomputing Sarah A. Pendergrass, Shefali S. Verma, Emily Rose Holzinger, Carrie Moore, John R. Wallace, Scott M. Dudek, Wayne Huggins, Terrie E. Kitchner, Carol Waudby, Richard L. Berg, Catherine A. McCarty, Marylyn D. Ritchie
2013	J	`jnl`	Visualizing genomic information across chromosomes with PhenoGram. BioData Min. Daniel Wolfe, Scott M. Dudek, Marylyn D. Ritchie, Sarah A. Pendergrass
2012	—	`conf`	Comparison of Methods for Meta-dimensional Data Analysis Using in Silico and Biological Data Sets. EvoBIO Emily Rose Holzinger, Scott M. Dudek, Alex T. Frase, Brooke L. Fridley, Prabhakar Chalise, Marylyn D. Ritchie
2012	J	`jnl`	Visually integrating and exploring high throughput Phenome-Wide Association Study (PheWAS) results using PheWAS-View. BioData Min. Sarah A. Pendergrass, Scott M. Dudek, Dana C. Crawford, Marylyn D. Ritchie
2011	—	`conf`	ATHENA Optimization: The Effect of Initial Parameter Settings across Different Genetic Models. EvoBio Emily Rose Holzinger, Scott M. Dudek, Eric Torstenson, Marylyn D. Ritchie
2011	Misc	`conf`	Visual Integration of Results from a Large Dna Biobank (Biovu) Using Synthesis-View. Pacific Symposium on Biocomputing Sarah A. Pendergrass, Scott M. Dudek, Dan M. Roden, Dana C. Crawford, Marylyn D. Ritchie
2010	J	`jnl`	ATHENA: A knowledge-based hybrid backpropagation-grammatical evolution neural network algorithm for discovering epistasis among quantitative trait Loci. BioData Min. Stephen D. Turner, Scott M. Dudek, Marylyn D. Ritchie
2010	Misc	`conf`	Finding Unique Filter Sets in PLATO: A Precursor to Efficient Interaction Analysis in GWAS Data. Pacific Symposium on Biocomputing Benjamin J. Grady, Eric Torstenson, Scott M. Dudek, Justin Giles, David Sexton, Marylyn D. Ritchie
2010	—	`conf`	Grammatical Evolution of Neural Networks for Discovering Epistasis among Quantitative Trait Loci. EvoBIO Stephen D. Turner, Scott M. Dudek, Marylyn D. Ritchie
2010	—	`conf`	Incorporating Domain Knowledge into Evolutionary Computing for Discovering Gene-Gene Interaction. PPSN (1) Stephen D. Turner, Scott M. Dudek, Marylyn D. Ritchie
2010	A	`conf`	Initialization parameter sweep in ATHENA: optimizing neural networks for detecting gene-gene interactions in the presence of small main effects. GECCO Emily Rose Holzinger, Carrie C. Buchanan, Scott M. Dudek, Eric Torstenson, Stephen D. Turner, Marylyn D. Ritchie
2010	J	`jnl`	Synthesis-View: visualization and interpretation of SNP association results for multi-cohort, multi-phenotype data and meta-analysis. BioData Min. Sarah A. Pendergrass, Scott M. Dudek, Dana C. Crawford, Marylyn D. Ritchie
2010	J	`jnl`	Visualizing SNP statistics in the context of linkage disequilibrium using LD-Plus. Bioinform. William S. Bush, Scott M. Dudek, Marylyn D. Ritchie
2009	Misc	`conf`	Biofilter: A Knowledge-Integration System for the Multi-Locus Analysis of Genome-Wide Association Studies. Pacific Symposium on Biocomputing William S. Bush, Scott M. Dudek, Marylyn D. Ritchie
2008	A	`conf`	A balanced accuracy fitness function leads to robust analysis using grammatical evolution neural networks in the case of class imbalance. GECCO Nicholas E. Hardison, Theresa J. Fanelli, Scott M. Dudek, David M. Reif, Marylyn D. Ritchie, Alison A. Motsinger-Reif
2008	J	`jnl`	Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction. BMC Bioinform. William S. Bush, Todd L. Edwards, Scott M. Dudek, Brett A. McKinney, Marylyn D. Ritchie
2008	—	`conf`	Generating Linkage Disequilibrium Patterns in Data Simulations Using genomeSIMLA. EvoBIO Todd L. Edwards, William S. Bush, Stephen D. Turner, Scott M. Dudek, Eric Torstenson, Mike Schmidt, Eden Martin, Marylyn D. Ritchie
2006	A	`conf`	Alternative cross-over strategies and selection techniques for grammatical evolution optimized neural networks. GECCO Alison A. Motsinger, Lance W. Hahn, Scott M. Dudek, Kelli K. Ryckman, Marylyn D. Ritchie
2006	—	`conf`	Comparison of Neural Network Optimization Approaches for Studies of Human Genetics. EvoWorkshops Alison A. Motsinger, Scott M. Dudek, Lance W. Hahn, Marylyn D. Ritchie
2006	Misc	`conf`	Data Simulation Software for Whole-Genome Association and Other Studies in Human Genetics. Pacific Symposium on Biocomputing Scott M. Dudek, Alison A. Motsinger, Digna R. Velez, Scott M. Williams, Marylyn D. Ritchie
2006	J	`jnl`	Parallel multifactor dimensionality reduction: a tool for the large-scale analysis of gene-gene interactions. Bioinform. William S. Bush, Scott M. Dudek, Marylyn D. Ritchie
2006	C	`conf`	Understanding the Evolutionary Process of Grammatical Evolution Neural Networks for Feature Selection in Genetic Epidemiology. CIBCB Alison A. Motsinger, David M. Reif, Scott M. Dudek, Marylyn D. Ritchie
2005	—	`conf`	Can Neural Network Constraints in GP Provide Power to Detect Genes Associated with Human Disease?. EvoWorkshops William S. Bush, Alison A. Motsinger, Scott M. Dudek, Marylyn D. Ritchie
2005	Misc	`conf`	Exploratory Visual Analysis of Pharmacogenomic Results. Pacific Symposium on Biocomputing David M. Reif, Scott M. Dudek, Christian M. Shaffer, Janey Wang, Jason H. Moore