Sayed-Amir Marashi

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2021 J jnl
EIA-CNDP: An exact iterative algorithm for critical node detection problem.
Comput. Oper. Res.
Javad Rezaei, Fatemeh Zare-Mirakabad, Seyyed Ali MirHassani, Sayed-Amir Marashi
2020 J jnl
A system architecture for parallel analysis of flux-balanced metabolic pathways.
Comput. Biol. Chem.
Mona Arabzadeh, Mehdi Sedighi, Morteza Saheb Zamani, Sayed-Amir Marashi
2020 J jnl
NDDSA: A network- and domain-based method for predicting drug-side effect associations.
Inf. Process. Manag.
Soheila Shabani-Mashcool, Sayed-Amir Marashi, Sajjad Gharaghani
2019 J jnl
Cancer driver gene discovery in transcriptional regulatory networks using influence maximization approach.
Comput. Biol. Medicine
Majid Rahimi, Babak Teimourpour, Sayed-Amir Marashi
2018 J jnl
A graph-based approach to analyze flux-balanced pathways in metabolic networks.
Biosyst.
Mona Arabzadeh, Morteza Saheb Zamani, Mehdi Sedighi, Sayed-Amir Marashi
2017 J jnl
Biomedical applications of cell- and tissue-specific metabolic network models.
J. Biomed. Informatics
Hamideh Fouladiha, Sayed-Amir Marashi
2015 J jnl
CAMWI: Detecting protein complexes using weighted clustering coefficient and weighted density.
Comput. Biol. Chem.
Amir Lakizadeh, Saeed Jalili, Sayed-Amir Marashi
2015 J jnl
Evidence for the relationship between the regulatory effects of microRNAs and attack robustness of biological networks.
Comput. Biol. Medicine
Mehdi Ahmadi, Rahim Jafari, Sayed-Amir Marashi, Ali Farazmand
2015 J jnl
On correlated reaction sets and coupled reaction sets in metabolic networks.
J. Bioinform. Comput. Biol.
Sayed-Amir Marashi, Zhaleh Hosseini
2014 J jnl
FCDECOMP: Decomposition of metabolic networks based on flux coupling relations.
J. Bioinform. Comput. Biol.
Abolfazl Rezvan, Sayed-Amir Marashi, Changiz Eslahchi
2014 J jnl
Reconstruction of phylogenetic trees of prokaryotes using maximal common intervals.
Biosyst.
Mahdi Heydari, Sayed-Amir Marashi, Ruzbeh Tusserkani, Mehdi Sadeghi
2012 J jnl
Analysis of Metabolic Subnetworks by Flux Cone Projection.
Algorithms Mol. Biol.
Sayed-Amir Marashi, László Dávid, Alexander Bockmayr
2011 J jnl
FFCA: a feasibility-based method for flux coupling analysis of metabolic networks.
BMC Bioinform.
László Dávid, Sayed-Amir Marashi, Abdelhalim Larhlimi, Bettina Mieth, Alexander Bockmayr
2011 J jnl
Flux coupling analysis of metabolic networks is sensitive to missing reactions.
Biosyst.
Sayed-Amir Marashi, Alexander Bockmayr
2008 J jnl
A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins.
BMC Bioinform.
Armita Sheari, Mehdi Kargar, Ali Katanforoush, Shahriar Arab, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, Sayed-Amir Marashi
2008 J jnl
Impact of residue accessible surface area on the prediction of protein secondary structures.
BMC Bioinform.
Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk, Sayed-Amir Marashi
2006 J jnl
Impact of RNA structure on the prediction of donor and acceptor splice sites.
BMC Bioinform.
Sayed-Amir Marashi, Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi
2006 J jnl
Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks.
Comput. Biol. Chem.
Sayed-Amir Marashi, Hani Goodarzi, Mehdi Sadeghi, Changiz Eslahchi, Hamid Pezeshk