Satya S. Sahoo

35 papers Misc 10Journal 12Unranked 10

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Human in the Loop: Embedding Medical Expert Input in Large Language Models for Clinical Applications. MedInfo Pedram Golnari, Katrina Prantzalos, Dipak P. Upadhyaya, Jeffrey Buchhalter, Satya S. Sahoo
2025	J	`jnl`	Large language models can extract metadata for annotation of human neuroimaging publications. Frontiers Neuroinformatics Matthew D. Turner, Abhishek M. Appaji, Nibras Ar Rakib, Pedram Golnari, Arcot K. Rajasekar, Anitha Rathnam K. V, Satya S. Sahoo, Yue Wang, Lei Wang, Jessica A. Turner
2025	J	`jnl`	Ontology accelerates few-shot learning capability of large language model: A study in extraction of drug efficacy in a rare pediatric epilepsy. Int. J. Medical Informatics Pedram Golnari, Katrina Prantzalos, Veronica Hood, Mary Anne Meskis, Lori L. Isom, Karen Wilcox, Jack M. Parent, Dennis Lal, Samden D. Lhatoo, Howard P. Goodkin, Elaine C. Wirrell, Kelly G. Knupp, Manisha Patel, Jeffrey A. Loeb, Joseph E. Sullivan, Lauren Harte-Hargrove, Brandy E. Fureman, Jeffrey Buchhalter, Satya S. Sahoo
2025	—	`conf`	Standardized Epilepsy Data Collection and Analysis Leveraging the Four Dimensional Epilepsy Classification (4D-EC) Framework. MedInfo Katrina Prantzalos, Pedram Golnari, Dipak P. Upadhyaya, Suraj Thyagaraj, Guadalupe Fernandez-BacaVaca, Hans Luders, Satya S. Sahoo
2024	—	`conf`	A 360° View for Large Language Models: Early Detection of Amblyopia in Children Using Multi-view Eye Movement Recordings. AIME (2) Dipak P. Upadhyaya, Aasef G. Shaikh, Gokce Busra Cakir, Katrina Prantzalos, Pedram Golnari, Fatema F. Ghasia, Satya S. Sahoo
2024	J	`jnl`	Large language models for biomedicine: foundations, opportunities, challenges, and best practices. J. Am. Medical Informatics Assoc. Satya S. Sahoo, Joseph M. Plasek, Hua Xu, Özlem Uzuner, Trevor Cohen, Meliha Yetisgen, Hongfang Liu, Stéphane M. Meystre, Yanshan Wang
2024	J	`jnl`	Machine learning interpretability methods to characterize the importance of hematologic biomarkers in prognosticating patients with suspected infection. Comput. Biol. Medicine Dipak P. Upadhyaya, Yasir Tarabichi, Katrina Prantzalos, Salman Ayub, David C. Kaelber, Satya S. Sahoo
2024	J	`jnl`	Towards building a trustworthy pipeline integrating Neuroscience Gateway and Open Science Chain. Database J. Biol. Databases Curation Subhashini Sivagnanam, Steven Yeu, Kai Lin, Scott Sakai, F. Garzon, Kenneth Yoshimoto, Katrina Prantzalos, Dipak P. Upadhyaya, Amitava Majumdar, Satya S. Sahoo, William W. Lytton
2023	J	`jnl`	NeuroBridge ontology: computable provenance metadata to give the long tail of neuroimaging data a FAIR chance for secondary use. Frontiers Neuroinformatics Satya S. Sahoo, Matthew D. Turner, Lei Wang, José Luis Ambite, Abhishek M. Appaji, Arcot Rajasekar, Howard Lander, Yue Wang, Jessica A. Turner
2023	J	`jnl`	NeuroBridge: a prototype platform for discovery of the long-tail neuroimaging data. Frontiers Neuroinformatics Lei Wang, José Luis Ambite, Abhishek M. Appaji, Janine Bijsterbosch, Jérôme Dockès, Rick Herrick, Alexander Kogan, Howard Lander, Daniel S. Marcus, Stephen Moore, Jean-Baptiste Poline, Arcot Rajasekar, Satya S. Sahoo, Matthew D. Turner, Xiaochen Wang, Yue Wang, Jessica A. Turner
2022	Misc	`conf`	Enabling Scientific Reproducibility through FAIR Data Management: An ontology-driven deep learning approach in the NeuroBridge Project. AMIA Xiaochen Wang, Yue Wang, José Luis Ambite, Abhishek M. Appaji, Howard Lander, Stephen Moore, Arcot Rajasekar, Jessica A. Turner, Matthew D. Turner, Lei Wang, Satya S. Sahoo
2021	Misc	`conf`	Characterizing Brain Network Dynamics using Persistent Homology in Patients with Refractory Epilepsy. AMIA Jianzhe Zhang, Roland Bauman, Nassim Shafiabadi, Nick Gurski, Guadalupe Fernandez-BacaVaca, Satya S. Sahoo
2021	Misc	`conf`	Epilepsy-Connect: An Integrated Knowledgebase for Characterizing Alterations in Consciousness State of Pharmacoresistant Epilepsy Patients. AMIA Katrina Prantzalos, Jianzhe Zhang, Nassim Shafiabadi, Guadalupe Fernandez-BacaVaca, Satya S. Sahoo
2021	Misc	`conf`	Parkinson and movement disorders ontology for clinically-oriented and clinicians-driven data mining of multi-center cohorts in Parkinson's disease. AMIA Deepak K. Gupta, Massimo Marano, Raj Aurora, James Boyd, Satya S. Sahoo
2020	Misc	`conf`	NeuroIntegrative Connectivity (NIC) Informatics Tool for Brain Functional Connectivity Network Analysis in Cohort Studies. AMIA Satya S. Sahoo, Arthur L. Gershon, Nassim Shafiabadi, Kaushik Ghosh, Curtis Tatsuoka, Samden D. Lhatoo, Guadalupe Fernandez-BacaVaca
2019	—	`conf`	Computation of Brain Functional Connectivity Network Measures in Epilepsy: A Web-Based Platform for EEG Signal Data Processing and Analysis. MedInfo Vimig Socrates, Arthur L. Gershon, Satya S. Sahoo
2019	Misc	`conf`	Enhancing Multi-Center Patient Cohort Studies in the Managing Epilepsy Well (MEW) Network: Integrated Data Integration and Statistical Analysis. AMIA Xinting Hong, Chang Liu, Hasina Momotaz, Kristin Cassidy, Martha Sajatovic, Satya S. Sahoo
2019	J	`jnl`	ProvCaRe: Characterizing scientific reproducibility of biomedical research studies using semantic provenance metadata. Int. J. Medical Informatics Satya S. Sahoo, Joshua Valdez, Matthew Kim, Michael Rueschman, Susan Redline
2019	—	`conf`	Semantic Provenance Graph for Reproducibility of Biomedical Research Studies: Generating and Analyzing Graph Structures from Published Literature. MedInfo Satya S. Sahoo, Joshua Valdez, Michael Rueschman, Matthew Kim
2018	—	`conf`	Classification of Provenance Triples for Scientific Reproducibility: A Comparative Evaluation of Deep Learning Models in the ProvCaRe Project. IPAW Joshua Valdez, Matthew Kim, Michael Rueschman, Susan Redline, Satya S. Sahoo
2017	Misc	`conf`	A Flexible Computational Neuroinformatics Workflow for Computing Functional Networks in Epilepsy Neurological Disorder. AMIA Arthur L. Gershon, Bilal Zonjy, Curtis Tatsuoka, Kaushik Ghosh, Satya S. Sahoo
2017	—	`conf`	An Extensible Ontology Modeling Approach Using Post Coordinated Expressions for Semantic Provenance in Biomedical Research. OTM Conferences (2) Joshua Valdez, Michael Rueschman, Matthew Kim, Sara ArabYarmohammadi, Susan Redline, Satya S. Sahoo
2017	Misc	`conf`	ProvCaRe Semantic Provenance Knowledgebase: Evaluating Scientific Reproducibility of Research Studies. AMIA Joshua Valdez, Matthew Kim, Michael Rueschman, Vimig Socrates, Satya S. Sahoo
2016	—	`conf`	An Ontology-Enabled Natural Language Processing Pipeline for Provenance Metadata Extraction from Biomedical Text (Short Paper). OTM Conferences Joshua Valdez, Michael Rueschman, Matthew Kim, Susan Redline, Satya S. Sahoo
2016	J	`jnl`	Insight: An ontology-based integrated database and analysis platform for epilepsy self-management research. Int. J. Medical Informatics Satya S. Sahoo, Priya Ramesh, Elisabeth Welter, Ashley Bukach, Joshua Valdez, Curtis Tatsuoka, Yvan Bamps, Shelley Stoll, Barbara C. Jobst, Martha Sajatovic
2016	J	`jnl`	Managing information well: Toward an ontology-driven informatics platform for data sharing and secondary use in epilepsy self-management research centers. Health Informatics J. Satya S. Sahoo, Guo-Qiang Zhang, Yvan Bamps, Robert Fraser, Shelley Stoll, Samden D. Lhatoo, Curtis Tatsuoka, Johnny Sams, Elisabeth Welter, Martha Sajatovic
2016	J	`jnl`	NeuroPigPen: A Scalable Toolkit for Processing Electrophysiological Signal Data in Neuroscience Applications Using Apache Pig. Frontiers Neuroinformatics Satya S. Sahoo, Annan Wei, Joshua Valdez, Li Wang, Bilal Zonjy, Curtis Tatsuoka, Kenneth A. Loparo, Samden D. Lhatoo
2016	—	`ch.`	Processing Neurology Clinical Data for Knowledge Discovery: Scalable Data Flows Using Distributed Computing. Machine Learning for Health Informatics Satya S. Sahoo, Annan Wei, Curtis Tatsuoka, Kaushik Ghosh, Samden D. Lhatoo
2016	Misc	`conf`	Scientific Reproducibility in Biomedical Research: Provenance Metadata Ontology for Semantic Annotation of Study Description. AMIA Satya S. Sahoo, Joshua Valdez, Michael Rueschman
2015	J	`jnl`	A scalable neuroinformatics data flow for electrophysiological signals using MapReduce. Frontiers Neuroinformatics Catherine P. Jayapandian, Annan Wei, Priya Ramesh, Bilal Zonjy, Samden D. Lhatoo, Kenneth A. Loparo, Guo-Qiang Zhang, Satya S. Sahoo
2015	—	`conf`	Insight: Semantic provenance and analysis platform for multi-center neurology healthcare research. BIBM Priya Ramesh, Annan Wei, Elisabeth Welter, Yvan Bamps, Shelley Stoll, Ashley Bukach, Martha Sajatovic, Satya S. Sahoo
2014	Misc	`conf`	MEDCIS: Multi-Modality Epilepsy Data Capture and Integration System. AMIA Guo-Qiang Zhang, Licong Cui, Samden D. Lhatoo, Satya S. Sahoo
2012	—	`ed.`	Proceedings of the Workshop on Semantic Web for Provenance Management, SWPM@ESWC 2012, Heraklion, Greece, May 28, 2012 SWPM@ESWC Khalid Belhajjame, José Manuél Gómez-Pérez, Paolo Missier, Satya S. Sahoo, Jun Zhao
2010	—	`ed.`	Proceedings of the Second International Workshop on the role of Semantic Web in Provenance Management, SWPM@ISWC 2010, Shanghai, China, November 7, 2010 SWPM@ISWC Satya S. Sahoo, Jun Zhao, Paolo Missier, José Manuél Gómez-Pérez
2010	—	`conf`	Provenance of Microarray Experiments for a Better Understanding of Experiment Results. SWPM@ISWC Helena F. Deus, Jun Zhao, Satya S. Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M. Scott Marshall, Kei-Hoi Cheung