Satoru Kuhara

44 papers A* 1A 2B 3C 1Misc 5Journal 24Unranked 8
YearRankTypeTitle / Venue / Authors
2014 J jnl
A novel method for gathering and prioritizing disease candidate genes based on construction of a set of disease-related MeSH(R) terms.
BMC Bioinform.
Toshihide Ono, Satoru Kuhara
2013 — conf
Infrequent, Unexpected, and Contrast Pattern Discovery from Bacterial Genomes by Genome-wide Comparative Analysis.
BIOINFORMATICS
Daisuke Ikeda, Osamu Maruyama, Satoru Kuhara
2013 J jnl
The Purity Measure for genomic Regions leads to Horizontally Transferred genes.
J. Bioinform. Comput. Biol.
Yuta Taniguchi, Yasuhiro Yamada, Osamu Maruyama, Satoru Kuhara, Daisuke Ikeda
2011 J jnl
hERGAPDbase: a database documenting hERG channel inhibitory potentials and APD-prolongation activities of chemical compounds.
Database J. Biol. Databases Curation
Haretsugu Hishigaki, Satoru Kuhara
2010 J jnl
An Extension Approach for Neural Networks by Introducing a Nearest Neighbor Algorithm in Relative Coordinates.
J. Adv. Comput. Intell. Intell. Informatics
Hirofumi Suzaki, Satoru Kuhara
2009 Misc conf
Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks.
Pacific Symposium on Biocomputing
Yoshinori Tamada, Hiromitsu Araki, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Yuki Tomiyasu, Kaori Yasuda, Ben Dunmore, Deborah Sanders, Sally Humphreys, Cristin G. Print, Stephen D. Charnock-Jones, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
2008 — conf
Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations.
BIBM
Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara
2006 Misc conf
Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide RNA Expression Profiles.
Pacific Symposium on Biocomputing
Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Kaori Yasuda, Cristin G. Print, Stephen D. Charnock-Jones, Deborah Sanders, Christopher J. Savoie, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
2006 J jnl
Gene subset selection in kernel-induced feature space.
Pattern Recognit. Lett.
Satoshi Niijima, Satoru Kuhara
2006 J jnl
Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE.
BMC Bioinform.
Satoshi Niijima, Satoru Kuhara
2005 J jnl
Multiclass Molecular Cancer Classification by Kernel Subspace Methods with Effective Kernel Parameter Selection.
J. Bioinform. Comput. Biol.
Satoshi Niijima, Satoru Kuhara
2005 Misc conf
Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides.
International Conference on Computational Science (2)
Osamu Maruyama, Akiko Matsuda, Satoru Kuhara
2005 J jnl
Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides.
Int. J. Bioinform. Res. Appl.
Osamu Maruyama, Akiko Matsuda, Satoru Kuhara
2004 J jnl
An Integrated Comprehensive Workbench for Inferring Genetic Networks:
J. Bioinform. Comput. Biol.
Yukihiro Maki, Yoriko Takahashi, Yuji Arikawa, Shoji Watanabe, Ken Aoshima, Yukihiro Eguchi, Takanori Ueda, Sachiyo Aburatani, Satoru Kuhara, Masahiro Okamoto
2004 J jnl
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks.
J. Bioinform. Comput. Biol.
Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
2003 J jnl
A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis.
Theor. Comput. Sci.
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
2003 J jnl
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network.
J. Bioinform. Comput. Biol.
Seiya Imoto, Sunyong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
2003 — conf
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks.
CSB
Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
2003 J jnl
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling.
Signal Process.
Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto
2003 C conf
Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection.
ECCB
Yoshinori Tamada, Sunyong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
2003 J jnl
Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model.
Theor. Comput. Sci.
Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
2003 J jnl
Use of Gene Networks for Identifying and Validating Drug Targets.
J. Bioinform. Comput. Biol.
Seiya Imoto, Christopher J. Savoie, Sachiyo Aburatani, Sunyong Kim, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
2002 — conf
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network.
CSB
Seiya Imoto, Sunyong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
2002 — conf
Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations.
JCIS
Osamu Maruyama, Satoru Kuhara, Hideo Bannai, Satoru Miyano, Yoshinori Tamada
2002 J jnl
Fast algorithm for extracting multiple unordered short motifs using bit operations.
Inf. Sci.
Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano
2001 B conf
Learning Conformation Rules.
Discovery Science
Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano
2000 B conf
A Simple Greedy Algorithm for Finding Functional Relations: Efficient Implementation and Average Case Anaylsis.
Discovery Science
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
2000 J jnl
Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function.
J. Comput. Biol.
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
2000 B conf
Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function.
RECOMB
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
2000 J jnl
Inferring qualitative relations in genetic networks and metabolic pathways.
Bioinform.
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
1999 Misc conf
Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model.
Pacific Symposium on Biocomputing
Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
1999 J jnl
The hydrophobic cores of proteins predicted by wavelet analysis.
Bioinform.
Hideki Hirakawa, S. Muta, Satoru Kuhara
1999 Misc conf
Use of Bonsai Decision Trees for the Identification of Potential MHC Class I Peptide Epitope Motifs.
Pacific Symposium on Biocomputing
Christopher J. Savoie, Nobuhiro Kamikawaji, Takehiko Sasazuki, Satoru Kuhara
1998 A* conf
Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions.
SODA
Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
1997 J jnl
Application of a deductive database system to search for topological and similar three-dimensional structures in protein.
Comput. Appl. Biosci.
Y. Tsukamoto, Kyoko Takiguchi, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara
1997 A conf
Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique.
ISMB
Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi
1995 A conf
BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences.
ISMB
Takayoshi Shoudai, Michael Lappe, Satoru Miyano, Ayumi Shinohara, Takeo Okazaki, Setsuo Arikawa, Tomoyuki Uchida, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara
1995 J jnl
Data Classification Component in a Deductive Database System and Its Application to Protein Structural Analysis.
IEICE Trans. Inf. Syst.
Akio Nishikawa, Kenji Satou, Emiko Furuichi, Satoru Kuhara, Kazuo Ushijima
1994 — conf
Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins.
HICSS (5)
Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Satoru Kuhara, Toshihisa Takagi
1994 — conf
Development of an integrated Database for Genome Mapping and Nucleotide Sequences.
HICSS (5)
Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa
1993 J jnl
A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns.
New Gener. Comput.
Setsuo Arikawa, Satoru Miyano, Ayumi Shinohara, Satoru Kuhara, Yasuhito Mukouchi, Takeshi Shinohara
1993 J jnl
A deductive database system PACADE for analyzing 3-D and secondary structures of protein.
Comput. Appl. Biosci.
Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi, Satoru Kuhara
1992 — conf
A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns.
FGCS
Setsuo Arikawa, Satoru Kuhara, Satoru Miyano, Yasuhito Mukouchi, Ayumi Shinohara, Takeshi Shinohara
1984 J jnl
GENAS: a database system for nucleic acid sequence analysis.
Nucleic Acids Res.
Satoru Kuhara, Fumihiro Matsuo, Syoichi Futamura, Atsushi Fujita, Takeshi Shinohara, Toshihisa Takagi, Yoshiyuki Sakaki