Santiago Marco-Sola

27 papers A* 3A 1B 5C 2Journal 14Unranked 1

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	ILVES: Accurate and efficient bond length and angle constraints in molecular dynamics. CoRR Lorién López-Villellas, Carl Christian Kjelgaard Mikkelsen, Juan José Galano-Frutos, Santiago Marco-Sola, Jesús Alastruey-Benedé, Pablo Ibáñez, Miquel Moretó, Maria Cristina De Rosa, Pablo García-Risueño
2025	J	`jnl`	QuickEd: high-performance exact sequence alignment based on bound-and-align. Bioinform. Max Doblas, Oscar Lostes-Cazorla, Quim Aguado-Puig, Cristian Iñiguez, Miquel Moretó, Santiago Marco-Sola
2025	A*	`conf`	SMX: Heterogeneous Architecture for Universal Sequence Alignment Acceleration. MICRO Max Doblas, Po Jui Shih, Oscar Lostes-Cazorla, Miquel Moretó, Christopher Batten, Santiago Marco-Sola
2025	B	`conf`	Squire: A General-Purpose Accelerator to Exploit Fine-Grain Parallelism on Dependency-Bound Kernels. PACT Rubén Langarita, Jesús Alastruey-Benedé, Pablo Ibáñez-Marín, Santiago Marco-Sola, Miquel Moretó, Adrià Armejach
2025	J	`jnl`	Squire: A General-Purpose Accelerator to Exploit Fine-Grain Parallelism on Dependency-Bound Kernels. CoRR Rubén Langarita, Jesús Alastruey-Benedé, Pablo Ibáñez-Marín, Santiago Marco-Sola, Miquel Moretó, Adrià Armejach
2024	J	`jnl`	BIMSA: accelerating long sequence alignment using processing-in-memory. Bioinform. Alejandro Alonso-Marín, Ivan Fernandez, Quim Aguado-Puig, Juan Gómez-Luna, Santiago Marco-Sola, Onur Mutlu, Miquel Moretó
2024	J	`jnl`	GenArchBench: A genomics benchmark suite for arm HPC processors. Future Gener. Comput. Syst. Lorién López-Villellas, Rubén Langarita-Benítez, Asaf Badouh, Víctor Soria Pardos, Quim Aguado-Puig, Guillem López-Paradís, Max Doblas, Javier Setoain, Chulho Kim, Makoto Ono, Adrià Armejach, Santiago Marco-Sola, Jesús Alastruey-Benedé, Pablo Ibáñez, Miquel Moretó
2024	A*	`conf`	QUETZAL: Vector Acceleration Framework for Modern Genome Sequence Analysis Algorithms. ISCA Julian Pavon, Iván Vargas Valdivieso, Carlos Rojas, César Hernández, Mehmet Aslan, Roger Figueras, Yichao Yuan, Joël Lindegger, Mohammed Alser, Francesc Moll, Santiago Marco-Sola, Oguz Ergin, Nishil Talati, Onur Mutlu, Osman S. Unsal, Mateo Valero, Adrián Cristal
2023	J	`jnl`	Accurate and efficient constrained molecular dynamics of polymers using Newton's method and special purpose code. Comput. Phys. Commun. Lorién López-Villellas, Carl Christian Kjelgaard Mikkelsen, Juan José Galano-Frutos, Santiago Marco-Sola, Jesús Alastruey-Benedé, Pablo Ibáñez, Miquel Moretó, Javier Sancho, Pablo García-Risueño
2023	A*	`conf`	GMX: Instruction Set Extensions for Fast, Scalable, and Efficient Genome Sequence Alignment. MICRO Max Doblas, Oscar Lostes-Cazorla, Quim Aguado-Puig, Nick Cebry, Pau Fontova-Musté, Christopher Frances Batten, Santiago Marco-Sola, Miquel Moretó
2023	J	`jnl`	Optimal gap-affine alignment in Bioinform. Santiago Marco-Sola, Jordan M. Eizenga, Andrea Guarracino, Benedict Paten, Erik Garrison, Miquel Moretó
2023	—	`conf`	RISC-V for Genome Data Analysis: Opportunities and Challenges. DCIS Lorién López-Villellas, Esteve Pineda-Sánchez, Asaf Badouh, Santiago Marco-Sola, Pablo Ibáñez, Jesús Alastruey-Benedé, Miquel Moretó
2023	J	`jnl`	WFA-FPGA: An efficient accelerator of the wavefront algorithm for short and long read genomics alignment. Future Gener. Comput. Syst. Abbas Haghi, Santiago Marco-Sola, Lluc Alvarez, Dionysios Diamantopoulos, Christoph Hagleitner, Miquel Moretó
2023	J	`jnl`	WFA-GPU: gap-affine pairwise read-alignment using GPUs. Bioinform. Quim Aguado-Puig, Max Doblas, Christos Matzoros, Antonio Espinosa, Juan Carlos Moure, Santiago Marco-Sola, Miquel Moretó
2023	B	`conf`	WFAsic: A High-Performance ASIC Accelerator for DNA Sequence Alignment on a RISC-V SoC. ICPP Abbas Haghi, Lluc Alvarez, Jordi Fornt, Juan Miguel De Haro Ruiz, Roger Figueras, Max Doblas, Santiago Marco-Sola, Miquel Moretó
2022	J	`jnl`	Accelerating Edit-Distance Sequence Alignment on GPU Using the Wavefront Algorithm. IEEE Access Quim Aguado-Puig, Santiago Marco-Sola, Juan Carlos Moure, David Castells-Rufas, Lluc Alvarez, Antonio Espinosa, Miquel Moretó
2022	J	`jnl`	FPGA Acceleration of Pre-Alignment Filters for Short Read Mapping With HLS. IEEE Access David Castells-Rufas, Santiago Marco-Sola, Juan Carlos Moure, Quim Aguado-Puig, Antonio Espinosa
2022	C	`conf`	Sargantana: A 1 GHz+ In-Order RISC-V Processor with SIMD Vector Extensions in 22nm FD-SOI. DSD Víctor Soria Pardos, Max Doblas, Guillem López-Paradís, Gerard Candón, Narcís Rodas, Xavier Carril, Pau Fontova-Musté, Neiel Leyva, Santiago Marco-Sola, Miquel Moretó
2021	B	`conf`	An FPGA Accelerator of the Wavefront Algorithm for Genomics Pairwise Alignment. FPL Abbas Haghi, Santiago Marco-Sola, Lluc Alvarez, Dionysios Diamantopoulos, Christoph Hagleitner, Miquel Moretó
2021	J	`jnl`	Fast gap-affine pairwise alignment using the wavefront algorithm. Bioinform. Santiago Marco-Sola, Juan Carlos Moure, Miquel Moretó, Antonio Espinosa
2021	B	`conf`	OpenCL-based FPGA Accelerator for Semi-Global Approximate String Matching Using Diagonal Bit-Vectors. FPL David Castells-Rufas, Santiago Marco-Sola, Quim Aguado-Puig, Antonio Espinosa-Morales, Juan Carlos Moure, Lluc Alvarez, Miquel Moretó
2020	B	`conf`	The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications. ICPR Michele Cancilla, Laura Canalini, Federico Bolelli, Stefano Allegretti, Salvador Carrión, Roberto Paredes, Jon Ander Gómez, Simone Leo, Marco Enrico Piras, Luca Pireddu, Asaf Badouh, Santiago Marco-Sola, Lluc Alvarez, Miquel Moretó, Costantino Grana
2019	J	`jnl`	gemBS: high throughput processing for DNA methylation data from bisulfite sequencing. Bioinform. Angelika Merkel, Marcos Fernández-Callejo, Eloi Casals, Santiago Marco-Sola, Ronald P. Schuyler, Ivo Glynne Gut, Simon C. Heath
2017	—	`—`	Efficient approximate string matching techniques for sequence alignment. Santiago Marco-Sola
2015	J	`jnl`	Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access. IEEE ACM Trans. Comput. Biol. Bioinform. Alejandro Chacón, Santiago Marco-Sola, Antonio Espinosa, Paolo Ribeca, Juan Carlos Moure
2014	C	`conf`	FM-Index on GPU: A Cooperative Scheme to Reduce Memory Footprint. ISPA Alejandro Chacón, Santiago Marco-Sola, Antonio Espinosa, Paolo Ribeca, Juan Carlos Moure
2014	A	`conf`	Thread-cooperative, bit-parallel computation of levenshtein distance on GPU. ICS Alejandro Chacón, Santiago Marco-Sola, Antonio Espinosa, Paolo Ribeca, Juan Carlos Moure