Sandrine Dudoit

16 papers Journal 15Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
Improving replicability in single-cell RNA-Seq cell type discovery with Dune.
BMC Bioinform.
Hector Roux de Bézieux, Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca Chance, Davide Risso, Jesse A. Gillis, John Ngai, Elizabeth Purdom, Sandrine Dudoit
2023 J jnl
Cross-Validated Loss-based Covariance Matrix Estimator Selection in High Dimensions.
J. Comput. Graph. Stat.
Philippe Boileau, Nima S. Hejazi, Mark J. van der Laan, Sandrine Dudoit
2022 J jnl
CALDERA: finding all significant de Bruijn subgraphs for bacterial GWAS.
Bioinform.
Hector Roux de Bézieux, Leandro Lima, Fanny Perraudeau, Arnaud Mary, Sandrine Dudoit, Laurent Jacob
2021 J jnl
cvCovEst: Cross-validated covariance matrix estimator selection and evaluation in R.
J. Open Source Softw.
Philippe Boileau, Nima S. Hejazi, Brian Collica, Mark J. van der Laan, Sandrine Dudoit
2020 J jnl
Exploring high-dimensional biological data with sparse contrastive principal component analysis.
Bioinform.
Philippe Boileau, Nima S. Hejazi, Sandrine Dudoit
2020 J jnl
scPCA: A toolbox for sparse contrastive principal component analysis in R.
J. Open Source Softw.
Philippe Boileau, Nima S. Hejazi, Sandrine Dudoit
2019 J jnl
Filtering procedures for untargeted LC-MS metabolomics data.
BMC Bioinform.
Courtney Schiffman, Lauren Petrick, Kelsi Perttula, Yukiko Yano, Henrik Carlsson, Todd Whitehead, Catherine Metayer, Josie Hayes, Stephen M. Rappaport, Sandrine Dudoit
2018 J jnl
clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.
PLoS Comput. Biol.
Davide Risso, Liam Purvis, Russell B. Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth Purdom
2011 J jnl
GC-Content Normalization for RNA-Seq Data.
BMC Bioinform.
Davide Risso, Katja Schwartz, Gavin Sherlock, Sandrine Dudoit
2010 J jnl
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments.
BMC Bioinform.
James H. Bullard, Elizabeth Purdom, Kasper D. Hansen, Sandrine Dudoit
2009 J jnl
GenomeGraphs: integrated genomic data visualization with R.
BMC Bioinform.
Steffen Durinck, James H. Bullard, Paul T. Spellman, Sandrine Dudoit
2008 J jnl
A general framework for statistical performance comparison of evolutionary computation algorithms.
Inf. Sci.
David Shilane, Jarno Martikainen, Sandrine Dudoit, Seppo J. Ovaska
2006 — conf
A General Framework for Statistical Performance Comparison of Evolutionary Computation Algorithms.
Artificial Intelligence and Applications
David Shilane, Jarno Martikainen, Sandrine Dudoit, Seppo J. Ovaska
2006 J jnl
Multiple Testing Methods For ChIP - Chip High Density Oligonucleotide Array Data.
J. Comput. Biol.
Sündüz Keles, Mark J. van der Laan, Sandrine Dudoit, Simon E. Cawley
2003 J jnl
Bagging to Improve the Accuracy of A Clustering Procedure.
Bioinform.
Sandrine Dudoit, Jane Fridlyand
2003 J jnl
Loss-based estimation with cross-validation: applications to microarray data analysis.
SIGKDD Explor.
Sandrine Dudoit, Mark J. van der Laan, Sündüz Keles, Annette M. Molinaro, Sandra E. Sinisi, Siew Leng Teng