Sanchit Misra

51 papers A* 2A 11B 2C 1Misc 1Journal 25Unranked 8
YearRankTypeTitle / Venue / Authors
2026 J jnl
Accelerating minimap2 for whole-genome alignment.
Bioinform.
Ghanshyam Chandra, Md. Vasimuddin, Sanchit Misra, Chirag Jain
2025 J jnl
GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis.
Commun. ACM
Yufeng Gu, Arun Subramaniyan, Timothy Dunn, Alireza Khadem, Kuan-Yu Chen, Somnath Paul, Mohammad Vasimuddin, Sanchit Misra, David T. Blaauw, Satish Narayanasamy, Reetuparna Das
2024 J jnl
Generative Active Learning for the Search of Small-molecule Protein Binders.
CoRR
Maksym Korablyov, Cheng-Hao Liu, Moksh Jain, Almer M. van der Sloot, Eric Jolicoeur, Edward Ruediger, Andrei Cristian Nica, Emmanuel Bengio, Kostiantyn Lapchevskyi, Daniel St-Cyr, Doris Alexandra Schuetz, Victor Ion Butoi, Jarrid Rector-Brooks, Simon Blackburn, Leo Feng, Hadi Nekoei, Sai Krishna Gottipati, Priyesh Vijayan, Prateek Gupta, Ladislav Rampásek, Sasikanth Avancha, Pierre-Luc Bacon, William L. Hamilton, Brooks Paige, Sanchit Misra, Stanislaw Kamil Jastrzebski, Bharat Kaul, Doina Precup, José Miguel Hernández-Lobato, Marwin H. S. Segler, Michael M. Bronstein, Anne Marinier, Mike Tyers, Yoshua Bengio
2023 A* conf
DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing.
NeurIPS
Yangtian Zhang, Zuobai Zhang, Bozitao Zhong, Sanchit Misra, Jian Tang
2023 J jnl
DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing.
CoRR
Yangtian Zhang, Zuobai Zhang, Bozitao Zhong, Sanchit Misra, Jian Tang
2023 A* conf
GenDP: A Framework of Dynamic Programming Acceleration for Genome Sequencing Analysis.
ISCA
Yufeng Gu, Arun Subramaniyan, Timothy Dunn, Alireza Khadem, Kuan-Yu Chen, Somnath Paul, Md. Vasimuddin, Sanchit Misra, David T. Blaauw, Satish Narayanasamy, Reetuparna Das
2023 J jnl
PDB-Struct: A Comprehensive Benchmark for Structure-based Protein Design.
CoRR
Chuanrui Wang, Bozitao Zhong, Zuobai Zhang, Narendra Chaudhary, Sanchit Misra, Jian Tang
2022 J jnl
Accelerating Barnes-Hut t-SNE Algorithm by Efficient Parallelization on Multi-Core CPUs.
CoRR
Narendra Chaudhary, Alexander Pivovar, Pavel Yakovlev, Andrey Gorshkov, Sanchit Misra
2022 — conf
Accelerating Deep Learning based Identification of Chromatin Accessibility from noisy ATAC-seq Data.
IPDPS Workshops
Narendra Chaudhary, Sanchit Misra, Dhiraj D. Kalamkar, Alexander Heinecke, Evangelos Georganas, Barukh Ziv, Menachem Adelman, Bharat Kaul
2022 J jnl
Accelerating minimap2 for long-read sequencing applications on modern CPUs.
Nat. Comput. Sci.
Saurabh Kalikar, Chirag Jain, Md. Vasimuddin, Sanchit Misra
2022 J jnl
DistGNN-MB: Distributed Large-Scale Graph Neural Network Training on x86 via Minibatch Sampling.
CoRR
Md. Vasimuddin, Ramanarayan Mohanty, Sanchit Misra, Sasikanth Avancha
2022 J jnl
Tensor Processing Primitives: A Programming Abstraction for Efficiency and Portability in Deep Learning and HPC Workloads.
Frontiers Appl. Math. Stat.
Evangelos Georganas, Dhiraj D. Kalamkar, Sasikanth Avancha, Menachem Adelman, Deepti Aggarwal, Cristina Anderson, Alexander Breuer, Jeremy Bruestle, Narendra Chaudhary, Abhisek Kundu, Denise Kutnick, Frank Laub, Md. Vasimuddin, Sanchit Misra, Ramanarayan Mohanty, Hans Pabst, Brian Retford, Barukh Ziv, Alexander Heinecke
2021 J jnl
DistGNN: Scalable Distributed Training for Large-Scale Graph Neural Networks.
CoRR
Md. Vasimuddin, Sanchit Misra, Guixiang Ma, Ramanarayan Mohanty, Evangelos Georganas, Alexander Heinecke, Dhiraj D. Kalamkar, Nesreen K. Ahmed, Sasikanth Avancha
2021 A conf
DistGNN: scalable distributed training for large-scale graph neural networks.
SC
Md. Vasimuddin, Sanchit Misra, Guixiang Ma, Ramanarayan Mohanty, Evangelos Georganas, Alexander Heinecke, Dhiraj D. Kalamkar, Nesreen K. Ahmed, Sasikanth Avancha
2021 J jnl
Efficient and Generic 1D Dilated Convolution Layer for Deep Learning.
CoRR
Narendra Chaudhary, Sanchit Misra, Dhiraj D. Kalamkar, Alexander Heinecke, Evangelos Georganas, Barukh Ziv, Menachem Adelman, Bharat Kaul
2021 B conf
GenomicsBench: A Benchmark Suite for Genomics.
ISPASS
Arun Subramaniyan, Yufeng Gu, Timothy Dunn, Somnath Paul, Md. Vasimuddin, Sanchit Misra, David T. Blaauw, Satish Narayanasamy, Reetuparna Das
2021 J jnl
Tensor Processing Primitives: A Programming Abstraction for Efficiency and Portability in Deep Learning Workloads.
CoRR
Evangelos Georganas, Dhiraj D. Kalamkar, Sasikanth Avancha, Menachem Adelman, Cristina Anderson, Alexander Breuer, Narendra Chaudhary, Abhisek Kundu, Md. Vasimuddin, Sanchit Misra, Ramanarayan Mohanty, Hans Pabst, Barukh Ziv, Alexander Heinecke
2021 A conf
Tensor processing primitives: a programming abstraction for efficiency and portability in deep learning workloads.
SC
Evangelos Georganas, Dhiraj D. Kalamkar, Sasikanth Avancha, Menachem Adelman, Cristina Anderson, Alexander Breuer, Jeremy Bruestle, Narendra Chaudhary, Abhisek Kundu, Denise Kutnick, Frank Laub, Md. Vasimuddin, Sanchit Misra, Ramanarayan Mohanty, Hans Pabst, Barukh Ziv, Alexander Heinecke
2020 J jnl
Benchmarking Learned Indexes.
CoRR
Ryan Marcus, Andreas Kipf, Alexander van Renen, Mihail Stoian, Sanchit Misra, Alfons Kemper, Thomas Neumann, Tim Kraska
2020 J jnl
Benchmarking Learned Indexes.
Proc. VLDB Endow.
Ryan Marcus, Andreas Kipf, Alexander van Renen, Mihail Stoian, Sanchit Misra, Alfons Kemper, Thomas Neumann, Tim Kraska
2020 J jnl
Deep Graph Library Optimizations for Intel(R) x86 Architecture.
CoRR
Sasikanth Avancha, Md. Vasimuddin, Sanchit Misra, Ramanarayan Mohanty
2020 — conf
The Case for a Learned Sorting Algorithm.
SIGMOD Conference
Ani Kristo, Kapil Vaidya, Ugur Çetintemel, Sanchit Misra, Tim Kraska
2019 A conf
Accelerating Sequence Alignment to Graphs.
IPDPS
Chirag Jain, Sanchit Misra, Haowen Zhang, Alexander T. Dilthey, Srinivas Aluru
2019 A conf
Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems.
IPDPS
Md. Vasimuddin, Sanchit Misra, Heng Li, Srinivas Aluru
2019 J jnl
Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems.
CoRR
Md. Vasimuddin, Sanchit Misra, Heng Li, Srinivas Aluru
2019 J jnl
LISA: Towards Learned DNA Sequence Search.
CoRR
Darryl Ho, Jialin Ding, Sanchit Misra, Nesime Tatbul, Vikram Nathan, Md. Vasimuddin, Tim Kraska
2018 A conf
Optimizing high performance distributed memory parallel hash tables for DNA
SC
Tony C. Pan, Sanchit Misra, Srinivas Aluru
2018 B conf
Performance extraction and suitability analysis of multi- and many-core architectures for next generation sequencing secondary analysis.
PACT
Sanchit Misra, Tony C. Pan, Kanak Mahadik, George Powley, Priya N. Vaidya, Md. Vasimuddin, Srinivas Aluru
2017 A conf
Eliminating Irregularities of Protein Sequence Search on Multicore Architectures.
IPDPS
Jing Zhang, Sanchit Misra, Hao Wang, Wu-chun Feng
2016 J jnl
Scaling up Hartree-Fock calculations on Tianhe-2.
Int. J. High Perform. Comput. Appl.
Edmond Chow, Xing Liu, Sanchit Misra, Marat Dukhan, Mikhail Smelyanskiy, Jeff R. Hammond, Yunfei Du, Xiangke Liao, Pradeep Dubey
2016 J jnl
muBLASTP: database-indexed protein sequence search on multicore CPUs.
BMC Bioinform.
Jing Zhang, Sanchit Misra, Hao Wang, Wu-chun Feng
2015 C conf
Dtree: Dynamic Task Scheduling at Petascale.
ISC
Kiran Pamnany, Sanchit Misra, Md. Vasimuddin, Xing Liu, Edmond Chow, Srinivas Aluru
2015 J jnl
Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel®Xeon Phi™ Coprocessor.
IEEE ACM Trans. Comput. Biol. Bioinform.
Sanchit Misra, Kiran Pamnany, Srinivas Aluru
2014 A conf
Parallel Bayesian Network Structure Learning for Genome-Scale Gene Networks.
SC
Sanchit Misra, Md. Vasimuddin, Kiran Pamnany, Sriram P. Chockalingam, Yong Dong, Min Xie, Maneesha R. Aluru, Srinivas Aluru
2014 A conf
Parallel Mutual Information Based Construction of Whole-Genome Networks on the Intel (R) Xeon Phi (TM) Coprocessor.
IPDPS
Sanchit Misra, Kiran Pamnany, Srinivas Aluru
2012 J jnl
Accelerating pairwise statistical significance estimation for local alignment by harvesting GPU's power.
BMC Bioinform.
Yuhong Zhang, Sanchit Misra, Ankit Agrawal, Md. Mostofa Ali Patwary, Wei-keng Liao, Zhiguang Qin, Alok N. Choudhary
2012 J jnl
Lung cancer survival prediction using ensemble data mining on SEER data.
Sci. Program.
Ankit Agrawal, Sanchit Misra, Ramanathan Narayanan, Lalith Polepeddi, Alok N. Choudhary
2011 — conf
A lung cancer outcome calculator using ensemble data mining on SEER data.
BIOKDD
Ankit Agrawal, Sanchit Misra, Ramanathan Narayanan, Lalith Polepeddi, Alok N. Choudhary
2011 J jnl
Accelerating data mining workloads: current approaches and future challenges in system architecture design.
WIREs Data Mining Knowl. Discov.
Alok N. Choudhary, Daniel Honbo, Prabhat Kumar, Berkin Özisikyilmaz, Sanchit Misra, Gokhan Memik
2011 J jnl
Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing.
Bioinform.
Sanchit Misra, Ankit Agrawal, Wei-keng Liao, Alok N. Choudhary
2011 — conf
Efficient pairwise statistical significance estimation for local sequence alignment using GPU.
ICCABS
Yuhong Zhang, Sanchit Misra, Daniel Honbo, Ankit Agrawal, Wei-keng Liao, Alok N. Choudhary
2011 J jnl
Parallel pairwise statistical significance estimation of local sequence alignment using Message Passing Interface library.
Concurr. Comput. Pract. Exp.
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N. Choudhary
2011 — conf
Poster: A lung cancer mortality risk calculator based on SEER data.
ICCABS
Ankit Agrawal, Sanchit Misra, Ramanathan Narayanan, Lalith Polepeddi, Alok N. Choudhary
2011 — conf
Poster: Risk prediction for post-operative adverse outcomes in colorectal cancer surgery.
ICCABS
Ankit Agrawal, Sanchit Misra, Alok N. Choudhary, Karl Bilimoria
2010 Misc conf
FANGS: high speed sequence mapping for next generation sequencers.
SAC
Sanchit Misra, Ramanathan Narayanan, Simon Lin, Alok N. Choudhary
2010 A conf
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment.
HPDC
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N. Choudhary
2010 — conf
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads.
IPDPS Workshops
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao, Alok N. Choudhary, Simon Lin
2009 — conf
Mining Protein Interactions from Text Using Convolution Kernels.
PAKDD Workshops
Ramanathan Narayanan, Sanchit Misra, Simon Lin, Alok N. Choudhary
2008 A conf
An Efficient FPGA Implementation of Principle Component Analysis based Network Intrusion Detection System.
DATE
Abhishek Das, Sanchit Misra, Sumeet Joshi, Joseph Zambreno, Gokhan Memik, Alok N. Choudhary
2008 — ch.
High-Performance Distributed Data Mining.
Next Generation of Data Mining
Sanchit Misra, Ramanathan Narayanan, Daniel Honbo, Alok N. Choudhary
2008 A conf
Temperature-aware test scheduling for multiprocessor systems-on-chip.
ICCAD
David R. Bild, Sanchit Misra, Thidapat Chantem, Prabhat Kumar, Robert P. Dick, Xiaobo Sharon Hu, Li Shang, Alok N. Choudhary