Samuele Garda

14 papers A* 1Journal 9Unranked 4
YearRankTypeTitle / Venue / Authors
2024 J jnl
BELHD: Improving Biomedical Entity Linking with Homonoym Disambiguation.
CoRR
Samuele Garda, Ulf Leser
2024 J jnl
BELHD: improving biomedical entity linking with homonym disambiguation.
Bioinform.
Samuele Garda, Ulf Leser
2024 J jnl
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools.
Bioinform.
Mario Sänger, Samuele Garda, Xing David Wang, Leon Weber-Genzel, Pia Droop, Benedikt Fuchs, Alan Akbik, Ulf Leser
2024 J jnl
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools.
CoRR
Mario Sänger, Samuele Garda, Xing David Wang, Leon Weber-Genzel, Pia Droop, Benedikt Fuchs, Alan Akbik, Ulf Leser
2023 J jnl
BELB: a Biomedical Entity Linking Benchmark.
CoRR
Samuele Garda, Leon Weber-Genzel, Robert Martin, Ulf Leser
2023 J jnl
BELB: a biomedical entity linking benchmark.
Bioinform.
Samuele Garda, Leon Weber-Genzel, Robert Martin, Ulf Leser
2022 J jnl
BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing.
CoRR
Jason Alan Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Myungsun Kang, Ruisi Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen H. Bach, Stella Biderman, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, José David Posada, John Michael Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Michio Broad, Yanis Labrak, Shlok S. Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, Benjamin Beilharz
2022 A* conf
BigBio: A Framework for Data-Centric Biomedical Natural Language Processing.
NeurIPS
Jason A. Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Sunny Kang, Rosaline Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen H. Bach, Stella Biderman, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, José D. Posada, John M. Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Broad, Yanis Labrak, Shlok Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, Benjamin Beilharz
2022 J jnl
Chemical-protein relation extraction with ensembles of carefully tuned pretrained language models.
Database J. Biol. Databases Curation
Leon Weber, Mario Sänger, Samuele Garda, Fabio Barth, Christoph Alt, Ulf Leser
2022 J jnl
RegEl corpus: identifying DNA regulatory elements in the scientific literature.
Database J. Biol. Databases Curation
Samuele Garda, Freyda Lenihan-Geels, Sebastian Proft, Stefanie Hochmuth, Markus Schuelke, Dominik Seelow, Ulf Leser
2021 — conf
Extend, don't rebuild: Phrasing conditional graph modification as autoregressive sequence labelling.
EMNLP (1)
Leon Weber, Jannes Münchmeyer, Samuele Garda, Ulf Leser
2020 — conf
Hierarchical Document Classification as a Sequence Generation Task.
JCDL
Julian Risch, Samuele Garda, Ralf Krestel
2019 — conf
Mining Italian Short Argumentative Texts.
CLiC-it
Ivan Namor, Pietro Totis, Samuele Garda, Manfred Stede
2018 — conf
Book Recommendation Beyond the Usual Suspects - Embedding Book Plots Together with Place and Time Information.
ICADL
Julian Risch, Samuele Garda, Ralf Krestel