Samuel H. Payne

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
Strategic priorities for transformative progress in advancing biology with proteomics and artificial intelligence.
CoRR
Yingying Sun, Jun A, Zhiwei Liu, Rui Sun, Liujia Qian, Samuel H. Payne, Wout Bittremieux, Markus Ralser, Chen Li, Yi Chen, Zhen Dong, Yasset Pérez-Riverol, Asif Khan, Chris Sander, Ruedi Aebersold, Juan Antonio Vizcaíno, Jonathan R. Krieger, Jianhua Yao, Han Wen, Linfeng Zhang, Yunping Zhu, Yue Xuan, Benjamin Boyang Sun, Liang Qiao, Henning Hermjakob, Haixu Tang, Huanhuan Gao, Yamin Deng, Qing Zhong, Cheng Chang, Nuno Bandeira, Ming Li, Weinan E, Siqi Sun, Yuedong Yang, Gilbert S. Omenn, Yue Zhang, Ping Xu, Yan Fu, Xiaowen Liu, Christopher M. Overall, Yu Wang, Eric W. Deutsch, Luonan Chen, Jürgen Cox, Vadim Demichev, Fuchu He, Jiaxing Huang, Huilin Jin, Chao Liu, Nan Li, Zhongzhi Luan, Jiangning Song, Kaicheng Yu, Wanggen Wan, Tai Wang, Kang Zhang, Le Zhang, Peter A. Bell, Matthias Mann, Bing Zhang, Tiannan Guo
2023 J jnl
Evaluating a large language model's ability to solve programming exercises from an introductory bioinformatics course.
PLoS Comput. Biol.
Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge
2023 J jnl
Many bioinformatics programming tasks can be automated with ChatGPT.
CoRR
Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge
2021 J jnl
AutoCCS: automated collision cross-section calculation software for ion mobility spectrometry-mass spectrometry.
Bioinform.
Joon-Yong Lee, Aivett Bilbao, Christopher R. Conant, Kent J. Bloodsworth, Daniel J. Orton, Mowei Zhou, Jesse William Wilson, Xueyun Zheng, Ian K. Webb, Ailin Li, Kim K. Hixson, John C. Fjeldsted, Yehia M. Ibrahim, Samuel H. Payne, Christer Jansson, Richard D. Smith, Thomas O. Metz
2018 J jnl
Blazing Signature Filter: a library for fast pairwise similarity comparisons.
BMC Bioinform.
Joon-Yong Lee, Grant M. Fujimoto, Ryan Wilson, H. Steven Wiley, Samuel H. Payne
2017 J jnl
Familiarity Vs Trust: A Comparative Study of Domain Scientists' Trust in Visual Analytics and Conventional Analysis Methods.
IEEE Trans. Vis. Comput. Graph.
Aritra Dasgupta, Joon-Yong Lee, Ryan Wilson, Robert A. Lafrance, Nick Cramer, Kristin A. Cook, Samuel H. Payne
2017 J jnl
LIQUID: an-open source software for identifying lipids in LC-MS/MS-based lipidomics data.
Bioinform.
Jennifer E. Kyle, Kevin L. Crowell, Cameron P. Casey, Grant M. Fujimoto, Sangtae Kim, Sydney E. Dautel, Richard D. Smith, Samuel H. Payne, Thomas O. Metz
2017 J jnl
PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association.
Bioinform.
Jian Ma, Cameron P. Casey, Xueyun Zheng, Yehia M. Ibrahim, Christopher S. Wilkins, Ryan S. Renslow, Dennis G. Thomas, Samuel H. Payne, Matthew E. Monroe, Richard D. Smith, Justin G. Teeguarden, Erin S. Baker, Thomas O. Metz
2015 J jnl
Correcting systematic bias and instrument measurement drift with mzRefinery.
Bioinform.
Bryson C. Gibbons, Matthew Chambers, Matthew E. Monroe, David L. Tabb, Samuel H. Payne
2014 J jnl
Beyond the proteome: Mass Spectrometry Special Interest Group (MS-SIG) at ISMB/ECCB 2013.
Bioinform.
So Young Ryu, Samuel H. Payne, Christoph Schaab, Wenzhong Xiao
2014 J jnl
PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations.
Bioinform.
Andrey Tovchigrechko, Pratap Venepally, Samuel H. Payne
2013 J jnl
LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets.
Bioinform.
Kevin L. Crowell, Gordon W. Slysz, Erin S. Baker, Brian L. LaMarche, Matthew E. Monroe, Yehia M. Ibrahim, Samuel H. Payne, Gordon A. Anderson, Richard D. Smith