Samir Bhatt

40 papers A* 2A 1Journal 36Unranked 1
YearRankTypeTitle / Venue / Authors
2026 A* conf
BayesAgent: Bayesian Agentic Reasoning Under Uncertainty via Verbalized Probabilistic Graphical Modeling.
AAAI
Hengguan Huang, Xing Shen, Guang-Yuan Hao, Songtao Wang, Lingfa Meng, Dianbo Liu, David A. Duchêne, Hao Wang, Samir Bhatt
2026 J jnl
LERD: Latent Event-Relational Dynamics for Neurodegenerative Classification.
CoRR
Hairong Chen, Yicheng Feng, Ziyu Jia, Samir Bhatt, Hengguan Huang
2026 J jnl
Riemannian Neural Optimal Transport.
CoRR
Alessandro Micheli, Yueqi Cao, Anthea Monod, Samir Bhatt
2025 J jnl
Artificial intelligence for modelling infectious disease epidemics.
Nat.
Moritz U. G. Kraemer, Joseph L.-H. Tsui, Serina Chang, Spyros Lytras, Mark P. Khurana, Samantha Vanderslott, Sumali Bajaj, Neil Scheidwasser, Jacob Liam Curran-Sebastian, Elizaveta Semenova, Mengyan Zhang, H. Juliette T. Unwin, Oliver J. Watson, Cathal Mills, Abhishek Dasgupta, Luca Ferretti, Samuel V. Scarpino, Etien Koua, Oliver Morgan, Houriiyah Tegally, Ulrich Paquet, Loukas Moutsianas, Christophe Fraser, Neil M. Ferguson, Eric J. Topol, David A. Duchêne, Tanja Stadler, Patricia Kingori, Michael J. Parker, Francesca Dominici, Nigel Shadbolt, Marc A. Suchard, Oliver Ratmann, Seth R. Flaxman, Edward C. Holmes, Manuel Gomez-Rodriguez, Bernhard Schölkopf, Christl A. Donnelly, Oliver G. Pybus, Simon Cauchemez, Samir Bhatt
2025 J jnl
Diffusion Models for Inverse Problems in the Exponential Family.
CoRR
Alessandro Micheli, Mélodie Monod, Samir Bhatt
2025 J jnl
Graph Mixing Additive Networks.
CoRR
Maya Bechler-Speicher, Andrea Zerio, Maor Huri, Marie Vibeke Vestergaard, Ran Gilad-Bachrach, Tine Jess, Samir Bhatt, Aleksejs Sazonovs
2025 J jnl
Interpretable Graph Learning Over Sets of Temporally-Sparse Data.
CoRR
Andrea Zerio, Maya Bechler-Speicher, Maor Huri, Marie Vibeke Vestergaard, Ran Gilad-Bachrach, Tine Jess, Samir Bhatt, Aleksejs Sazonovs
2025 J jnl
NeuralSurv: Deep Survival Analysis with Bayesian Uncertainty Quantification.
CoRR
Mélodie Monod, Alessandro Micheli, Samir Bhatt
2025 J jnl
phylo2vec: a library for vector-based phylogenetic tree manipulation.
CoRR
Neil Scheidwasser, Ayush Nag, Matthew J. Penn, Anthony MV Jakob, Frederik Mølkjær Andersen, Mark P. Khurana, Landung Setiawan, Madeline Gordon, David A. Duchêne, Samir Bhatt
2025 J jnl
phylo2vec: a library for vector-based phylogenetic tree manipulation.
J. Open Source Softw.
Neil Scheidwasser, Ayush Nag, Matthew J. Penn, Anthony MV Jakob, Frederik Mølkjær Andersen, Mark P. Khurana, Landung Setiawan, David A. Duchêne, Samir Bhatt
2024 J jnl
Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models.
PLoS Comput. Biol.
Judith A. Bouman, Anthony Hauser, Simon L. Grimm, Martin Wohlfender, Samir Bhatt, Elizaveta Semenova, Andrew Gelman, Christian L. Althaus, Julien Riou
2024 J jnl
Contrastive Deep Learning Reveals Age Biomarkers in Histopathological Skin Biopsies.
CoRR
Kaustubh Chakradeo, Pernille Nielsen, Lise Mette Rahbek Gjerdrum, Gry Sahl Hansen, David A. Duchêne, Laust Hvas Mortensen, Majken K. Jensen, Samir Bhatt
2024 — conf
Deep Learning and MCMC with aggVAE for Shifting Administrative Boundaries: Mapping Malaria Prevalence in Kenya.
Epi UAI
Elizaveta Semenova, Swapnil Mishra, Samir Bhatt, Seth R. Flaxman, H. Juliette T. Unwin
2024 J jnl
KidSat: satellite imagery to map childhood poverty dataset and benchmark.
CoRR
Makkunda Sharma, Fan Yang, Duy-Nhat Vo, Esra Suel, Swapnil Mishra, Samir Bhatt, Oliver Fiala, William Rudgard, Seth R. Flaxman
2023 J jnl
A comparison of short-term probabilistic forecasts for the incidence of COVID-19 using mechanistic and statistical time series models.
CoRR
Nicolas Banholzer, Thomas A. Mellan, H. Juliette T. Unwin, Stefan Feuerriegel, Swapnil Mishra, Samir Bhatt
2023 J jnl
Continuous football player tracking from discrete broadcast data.
CoRR
Matthew J. Penn, Christl A. Donnelly, Samir Bhatt
2023 J jnl
Cox-Hawkes: doubly stochastic spatiotemporal Poisson processes.
Trans. Mach. Learn. Res.
Xenia Miscouridou, Samir Bhatt, George O. Mohler, Seth R. Flaxman, Swapnil Mishra
2023 J jnl
Deep learning and MCMC with aggVAE for shifting administrative boundaries: mapping malaria prevalence in Kenya.
CoRR
Elizaveta Semenova, Swapnil Mishra, Samir Bhatt, Seth R. Flaxman, H. Juliette T. Unwin
2023 J jnl
Estimating fine age structure and time trends in human contact patterns from coarse contact data: The Bayesian rate consistency model.
PLoS Comput. Biol.
Shozen Dan, Yu Chen, Yining Chen, Mélodie Monod, Veronika K. Jaeger, Samir Bhatt, André Karch, Oliver Ratmann
2023 J jnl
Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool.
PLoS Comput. Biol.
Rebecca K. Nash, Samir Bhatt, Anne Cori, Pierre Nouvellet
2023 J jnl
Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees.
CoRR
Matthew J. Penn, Neil Scheidwasser, Joseph Penn, Christl A. Donnelly, David A. Duchêne, Samir Bhatt
2023 J jnl
Phylo2Vec: a vector representation for binary trees.
CoRR
Matthew J. Penn, Neil Scheidwasser, Mark P. Khurana, David A. Duchêne, Christl A. Donnelly, Samir Bhatt
2023 J jnl
Pyfectious: An individual-level simulator to discover optimal containment policies for epidemic diseases.
PLoS Comput. Biol.
Arash Mehrjou, Ashkan Soleymani, Amin Abyaneh, Samir Bhatt, Bernhard Schölkopf, Stefan Bauer
2023 A* conf
Seq2Seq Surrogates of Epidemic Models to Facilitate Bayesian Inference.
AAAI
Giovanni Charles, Timothy M. Wolock, Peter Winskill, Azra C. Ghani, Samir Bhatt, Seth R. Flaxman
2022 J jnl
Cox-Hawkes: doubly stochastic spatiotemporal Poisson processes.
CoRR
Xenia Miscouridou, Samir Bhatt, George O. Mohler, Seth R. Flaxman, Swapnil Mishra
2022 J jnl
Seasonal variation in SARS-CoV-2 transmission in temperate climates: A Bayesian modelling study in 143 European regions.
PLoS Comput. Biol.
Tomas Gavenciak, Joshua Teperowski Monrad, Gavin Leech, Mrinank Sharma, Sören Mindermann, Samir Bhatt, Jan Markus Brauner, Jan Kulveit
2022 J jnl
Seq2Seq Surrogates of Epidemic Models to Facilitate Bayesian Inference.
CoRR
Giovanni Charles, Timothy M. Wolock, Peter Winskill, Azra C. Ghani, Samir Bhatt, Seth R. Flaxman
2022 J jnl
The interaction of transmission intensity, mortality, and the economy: a retrospective analysis of the COVID-19 pandemic.
CoRR
Christian Morgenstern, Daniel J. Laydon, Charles Whittaker, Swapnil Mishra, David J. Haw, Samir Bhatt, Neil M. Ferguson
2022 J jnl
πVAE: a stochastic process prior for Bayesian deep learning with MCMC.
Stat. Comput.
Swapnil Mishra, Seth R. Flaxman, Tresnia Berah, Harrison Zhu, Mikko S. Pakkanen, Samir Bhatt
2021 J jnl
Encoding spatiotemporal priors with VAEs for small-area estimation.
CoRR
Elizaveta Semenova, Yidan Xu, Adam Howes, Theo Rashid, Samir Bhatt, Swapnil Mishra, Seth R. Flaxman
2021 A conf
Gaussian process nowcasting: application to COVID-19 mortality reporting.
UAI
Iwona Hawryluk, Henrique Hoeltgebaum, Swapnil Mishra, Xenia Miscouridou, Ricardo P. Schnekenberg, Charles Whittaker, Michaela A. C. Vollmer, Seth R. Flaxman, Samir Bhatt, Thomas A. Mellan
2021 J jnl
Using Hawkes Processes to model imported and local malaria cases in near-elimination settings.
PLoS Comput. Biol.
H. Juliette T. Unwin, Isobel Routledge, Seth R. Flaxman, Marian-Andrei Rizoiu, Shengjie Lai, Justin Cohen, Daniel J. Weiss, Swapnil Mishra, Samir Bhatt
2020 J jnl
A unified machine learning approach to time series forecasting applied to demand at emergency departments.
CoRR
Michaela A. C. Vollmer, Ben Glampson, Thomas A. Mellan, Swapnil Mishra, Luca Mercuri, Ceire Costelloe, Robert Klaber, Graham S. Cooke, Seth R. Flaxman, Samir Bhatt
2020 J jnl
Tracking progress towards malaria elimination in China: Individual-level estimates of transmission and its spatiotemporal variation using a diffusion network approach.
PLoS Comput. Biol.
Isobel Routledge, Shengjie Lai, Katherine E. Battle, Azra C. Ghani, Manuel Gomez-Rodriguez, Kyle Gustafson, Swapnil Mishra, Juliette Unwin, Joshua L. Proctor, Andrew J. Tatem, Zhongjie Li, Samir Bhatt
2020 J jnl
πVAE: Encoding stochastic process priors with variational autoencoders.
CoRR
Swapnil Mishra, Seth R. Flaxman, Samir Bhatt
2019 J jnl
Spatial Analysis Made Easy with Linear Regression and Kernels.
CoRR
Philip Milton, Emanuele Giorgi, Samir Bhatt
2018 J jnl
Mapping local variation in educational attainment across Africa.
Nat.
Nicholas Graetz, Joseph Friedman, Aaron Osgood-Zimmerman, Roy Burstein, Molly H. Biehl, Chloe Shields, Jonathan F. Mosser, Daniel C. Casey, Aniruddha Deshpande, Lucas Earl, Robert C. Reiner, Sarah E. Ray, Nancy Fullman, Aubrey J. Levine, Rebecca W. Stubbs, Benjamin K. Mayala, Joshua Longbottom, Annie J. Browne, Samir Bhatt, Daniel J. Weiss, Peter W. Gething, Ali H. Mokdad, Stephen S. Lim, Christopher J. L. Murray, Emmanuela Gakidou, Simon I. Hay
2018 J jnl
Stochastic Optimal Control of Epidemic Processes in Networks.
CoRR
Lars Lorch, Abir De, Samir Bhatt, William Trouleau, Utkarsh Upadhyay, Manuel Gomez-Rodriguez
2016 J jnl
Faster Adaptation in Smaller Populations: Counterintuitive Evolution of HIV during Childhood Infection.
PLoS Comput. Biol.
Jayna Raghwani, Samir Bhatt, Oliver G. Pybus
2013 J jnl
The global distribution and burden of dengue.
Nat.
Samir Bhatt, Peter W. Gething, Oliver J. Brady, Jane P. Messina, Andrew W. Farlow, Catherine L. Moyes, John M. Drake, John S. Brownstein, Anne Gatewood Hoen, Osman Sankoh, Monica F. Myers, Dylan B. George, Thomas Jaenisch, G. R. William Wint, Cameron P. Simmons, Thomas W. Scott, Jeremy J. Farrar, Simon I. Hay