Samantha Petti

21 papers A* 1Journal 17Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
A large deviation principle for block models.
Comb. Probab. Comput.
Christian Borgs, Jennifer T. Chayes, Julia Gaudio, Samantha Petti, Subhabrata Sen
2025 J jnl
An interpretable alphabet for local protein structure search based on amino acid neighborhoods.
Bioinform.
Saba Zerefa, Jesse Cool, Pramesh Singh, Samantha Petti
2025 J jnl
Inferring genotype-phenotype maps using attention models.
CoRR
Krishna Rijal, Caroline M. Holmes, Samantha Petti, Gautam Reddy, Michael M. Desai, Pankaj Mehta
2025 J jnl
On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing.
CoRR
Samantha Petti, Carlos Martí-Gómez, Justin B. Kinney, Juannan Zhou, David M. McCandlish
2023 J jnl
Correction: Constructing Benchmark Test Sets for Biological Sequence Analysis Using Independent Set Algorithms.
PLoS Comput. Biol.
Samantha Petti, Sean R. Eddy
2023 J jnl
End-to-end learning of multiple sequence alignments with differentiable Smith-Waterman.
Bioinform.
Samantha Petti, Nicholas Bhattacharya, Roshan Rao, Justas Dauparas, Neil Thomas, Juannan Zhou, Alexander M. Rush, Peter K. Koo, Sergey Ovchinnikov
2022 J jnl
Approximating sparse graphs: The random overlapping communities model.
Random Struct. Algorithms
Samantha Petti, Santosh S. Vempala
2022 J jnl
Constructing benchmark test sets for biological sequence analysis using independent set algorithms.
PLoS Comput. Biol.
Samantha Petti, Sean R. Eddy
2020 J jnl
Correlation decay for hard spheres via Markov chains.
CoRR
Tyler Helmuth, Will Perkins, Samantha Petti
2020 — —
Randomness as a tool for modeling and uncovering structure.
Samantha Petti
2019 — conf
Thresholds in Random Motif Graphs.
APPROX-RANDOM
Michael Anastos, Peleg Michaeli, Samantha Petti
2018 J jnl
Approximating Sparse Graphs: The Random Overlapping Communities Model.
CoRR
Samantha Petti, Santosh S. Vempala
2018 J jnl
Balanced allocation through random walk.
Inf. Process. Lett.
Alan M. Frieze, Samantha Petti
2018 — conf
The cover time of a biased random walk on
ANALCO
Colin Cooper, Alan M. Frieze, Samantha Petti
2017 J jnl
A Space of Phylogenetic Networks.
SIAM J. Appl. Algebra Geom.
Satyan L. Devadoss, Samantha Petti
2017 J jnl
Balanced Allocation Through Random Walk.
CoRR
Alan M. Frieze, Samantha Petti
2017 J jnl
Random Overlapping Communities: Approximating Motif Densities of Large Graphs.
CoRR
Samantha Petti, Santosh S. Vempala
2017 J jnl
The covertime of a biased random walk on G
CoRR
Colin Cooper, Alan M. Frieze, Samantha Petti
2016 J jnl
A Space of Phylogenetic Networks.
CoRR
Satyan L. Devadoss, Samantha Petti
2016 A* conf
Cortical Computation via Iterative Constructions.
COLT
Christos H. Papadimitriou, Samantha Petti, Santosh S. Vempala
2016 J jnl
Cortical Computation via Iterative Constructions.
CoRR
Christos H. Papadimitriou, Samantha Petti, Santosh S. Vempala