Salvatore Alaimo

17 papers Journal 13Unranked 4
YearRankTypeTitle / Venue / Authors
2024 — conf
Motif Finding Algorithms: A Performance Comparison.
From Computational Logic to Computational Biology
Emanuele Martorana, Roberto Grasso, Giovanni Micale, Salvatore Alaimo, Dennis E. Shasha, Rosalba Giugno, Alfredo Pulvirenti
2024 J jnl
NetMe 2.0: a web-based platform for extracting and modeling knowledge from biomedical literature as a labeled graph.
Bioinform.
Antonio Di Maria, Lorenzo Bellomo, Fabrizio Billeci, Alfio Cardillo, Salvatore Alaimo, Paolo Ferragina, Alfredo Ferro, Alfredo Pulvirenti
2023 J jnl
DEGGs: an R package with shiny app for the identification of differentially expressed gene-gene interactions in high-throughput sequencing data.
Bioinform.
Elisabetta C. Sciacca, Salvatore Alaimo, Gianmarco Silluzio, Alfredo Ferro, Vito Latora, Costantino Pitzalis, Alfredo Pulvirenti, Myles J. Lewis
2023 — conf
MASFENON: Multi-Agent Adaptive Simulation Framework for Evolution in Networks of Networks.
BIBM
Giorgio Locicero, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti
2022 — conf
COMBO: A Computational Framework to Analyze RNA-seq and Methylation Data Through Heterogeneous Multi-layer Networks.
COMPLEX NETWORKS (1)
Ilaria Cosentini, Vincenza Barresi, Daniele Filippo Condorelli, Alfredo Ferro, Alfredo Pulvirenti, Salvatore Alaimo
2022 J jnl
NETME: on-the-fly knowledge network construction from biomedical literature.
Appl. Netw. Sci.
Alessandro Muscolino, Antonio Di Maria, Rosaria Valentina Rapicavoli, Salvatore Alaimo, Lorenzo Bellomo, Fabrizio Billeci, Stefano Borzì, Paolo Ferragina, Alfredo Ferro, Alfredo Pulvirenti
2022 J jnl
Virus finding tools: current solutions and limitations.
Briefings Bioinform.
Grete Francesca Privitera, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti
2021 J jnl
PHENSIM: Phenotype Simulator.
PLoS Comput. Biol.
Salvatore Alaimo, Rosaria Valentina Rapicavoli, Gioacchino P. Marceca, Alessandro La Ferlita, Oksana B. Serebrennikova, Philip N. Tsichlis, Bud Mishra, Alfredo Pulvirenti, Alfredo Ferro
2021 J jnl
RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis.
BMC Bioinform.
Alessandro La Ferlita, Salvatore Alaimo, Sebastiano Di Bella, Emanuele Martorana, Georgios I. Laliotis, Francesco Bertoni, Luciano Cascione, Philip N. Tsichlis, Alfredo Ferro, Roberta Bosotti, Alfredo Pulvirenti
2020 J jnl
A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data.
Briefings Bioinform.
Sebastiano Di Bella, Alessandro La Ferlita, Giovanni Carapezza, Salvatore Alaimo, Antonella Isacchi, Alfredo Ferro, Alfredo Pulvirenti, Roberta Bosotti
2020 — conf
NETME: On-the-Fly Knowledge Network Construction from Biomedical Literature.
COMPLEX NETWORKS (2)
Alessandro Muscolino, Antonio Di Maria, Salvatore Alaimo, Stefano Borzì, Paolo Ferragina, Alfredo Ferro, Alfredo Pulvirenti
2019 J jnl
Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer.
Database J. Biol. Databases Curation
Alessandro La Ferlita, Salvatore Alaimo, Dario Veneziano, Giovanni Nigita, Veronica Balatti, Carlo Maria Croce, Alfredo Ferro, Alfredo Pulvirenti
2019 J jnl
TACITuS: transcriptomic data collector, integrator, and selector on big data platform.
BMC Bioinform.
Salvatore Alaimo, Antonio Di Maria, Dennis E. Shasha, Alfredo Ferro, Alfredo Pulvirenti
2017 J jnl
A novel computational method for inferring competing endogenous interactions.
Briefings Bioinform.
Davide S. Sardina, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno
2015 J jnl
DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference.
BMC Syst. Biol.
Salvatore Alaimo, Vincenzo Bonnici, Damiano Cancemi, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti
2015 J jnl
Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification.
CoRR
Salvatore Alaimo, Rosalba Giugno, Mario Acunzo, Dario Veneziano, Alfredo Ferro, Alfredo Pulvirenti
2013 J jnl
Drug-target interaction prediction through domain-tuned network-based inference.
Bioinform.
Salvatore Alaimo, Alfredo Pulvirenti, Rosalba Giugno, Alfredo Ferro