Saliya Ekanayake

31 papers A 4B 4C 1Misc 3Journal 12Unranked 7

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Corsair: An In-Memory Computing Chiplet Architecture for Inference-Time Compute Acceleration. IEEE Micro Satyam Srivastava, Akhil Arunkumar, Nithesh Kurella, Amrit Panda, Gaurav Jain, Purushotham Kamath, Mark Wutzke, Arun Tiruvur, Mayank Mike Gupta, Ilya Soloveychik, Vamsi Darsi, Malav Dalal, Vinayak Patankar, Sasidhar Dudyala, Senthil Duraisamy, Santhosh Ramchandran, Raghav Venkatasubramanian, Yuwei Qin, Xin Wang, Jayaprakash Balachandran, Ali Murat Gok, Piotr Wojciechowski, Saliya Ekanayake, Chris Ng, Ranju Sarma, Shubhankit Rathore, Tristan Trouwen, Siwei Zhuang, Chris J. Nicol, Sudeep Bhoja
2023	J	`jnl`	Extreme-scale many-against-many protein similarity search. CoRR Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
2022	A	`conf`	Extreme-Scale Many-against-Many Protein Similarity Search. SC Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
2022	J	`jnl`	Stochastic gradient descent-based support vector machines training optimization on Big Data and HPC frameworks. Concurr. Comput. Pract. Exp. Vibhatha Abeykoon, Geoffrey C. Fox, Minje Kim, Saliya Ekanayake, Supun Kamburugamuve, Kannan Govindarajan, Pulasthi Wickramasinghe, Niranda Perera, Chathura Widanage, Ahmet Uyar, Gurhan Gunduz, Selahatin Akkas
2021	J	`jnl`	Parallel Algorithms for Densest Subgraph Discovery Using Shared Memory Model. CoRR B. D. M. De Zoysa, Y. A. M. M. A. Ali, M. D. I. Maduranga, Indika Perera, Saliya Ekanayake, Anil Vullikanti
2020	J	`jnl`	Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices. CoRR Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç
2020	A	`conf`	Distributed many-to-many protein sequence alignment using sparse matrices. SC Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç
2020	J	`jnl`	Networked experiments and modeling for producing collective identity in a group of human subjects using an iterative abduction framework. Soc. Netw. Anal. Min. Vanessa Cedeno-Mieles, Zhihao Hu, Yihui Ren, Xinwei Deng, Abhijin Adiga, Christopher L. Barrett, Noshir Contractor, Saliya Ekanayake, Joshua M. Epstein, Brian J. Goode, Gizem Korkmaz, Chris J. Kuhlman, Dustin Machi, Michael W. Macy, Madhav V. Marathe, Naren Ramakrishnan, S. S. Ravi, Parang Saraf, Nathan Self
2020	J	`jnl`	The Parallelism Motifs of Genomic Data Analysis. CoRR Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker
2019	J	`jnl`	MIDAS: Multilinear detection at scale. J. Parallel Distributed Comput. Saliya Ekanayake, Jose Cadena, Udayanga Wickramasinghe, Anil Vullikanti
2019	B	`conf`	Mechanistic and data-driven agent-based models to explain human behavior in online networked group anagram games. ASONAM Vanessa Cedeno-Mieles, Zhihao Hu, Xinwei Deng, Yihui Ren, Abhijin Adiga, Christopher L. Barrett, Saliya Ekanayake, Gizem Korkmaz, Chris J. Kuhlman, Dustin Machi, Madhav V. Marathe, S. S. Ravi, Brian J. Goode, Naren Ramakrishnan, Parang Saraf, Nathan Self, Noshir Contractor, Joshua M. Epstein, Michael W. Macy
2019	Misc	`conf`	On the Modeling and Agent-Based Simulation of a Cooperative Group Anagram Game. WSC Zhihao Hu, Dustin Machi, Madhav V. Marathe, S. S. Ravi, Yihui Ren, Vanessa Cedeno-Mieles, Saliya Ekanayake, Xinwei Deng, Brian J. Goode, Naren Ramakrishnan, Parang Saraf, Nathan Self, Abhijin Adiga, Gizem Korkmaz, Chris J. Kuhlman
2019	C	`conf`	RDMA Managed Buffers: A Case for Accelerating Communication Bound Processes via Fine-Grained Events for Zero-Copy Message Passing. ISPDC Udayanga Wickramasinghe, Andrew Lumsdaine, Saliya Ekanayake, Martin Swany
2019	A	`conf`	The Matrix: An Agent-Based Modeling Framework for Data Intensive Simulations. AAMAS Parantapa Bhattacharya, Saliya Ekanayake, Chris J. Kuhlman, Christian Lebiere, Don Morrison, Samarth Swarup, Mandy L. Wilson, Mark G. Orr
2018	J	`jnl`	Anatomy of machine learning algorithm implementations in MPI, Spark, and Flink. Int. J. High Perform. Comput. Appl. Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Geoffrey C. Fox
2018	B	`conf`	Generative Modeling of Human Behavior and Social Interactions Using Abductive Analysis. ASONAM Yihui Ren, Vanessa Cedeno-Mieles, Zhihao Hu, Xinwei Deng, Abhijin Adiga, Christopher L. Barrett, Saliya Ekanayake, Brian J. Goode, Gizem Korkmaz, Chris J. Kuhlman, Dustin Machi, Madhav V. Marathe, Naren Ramakrishnan, S. S. Ravi, Parang Saraf, Nathan Self, Noshir Contractor, Joshua M. Epstein, Michael W. Macy
2018	A	`conf`	MIDAS: Multilinear Detection at Scale. IPDPS Saliya Ekanayake, Jose Cadena, Udayanga Wickramasinghe, Anil Vullikanti
2018	Misc	`conf`	Pipelines and their Compositions for Modeling and Analysis of controlled Online Networked Social Science Experiments. WSC Vanessa Cedeno-Mieles, Yihui Ren, Saliya Ekanayake, Brian J. Goode, Chris J. Kuhlman, Dustin Machi, Madhav V. Marathe, Henning S. Mortveit, Zhihao Hu, Xinwei Deng, Naren Ramakrishnan, Parang Saraf, Nathan Self, Noshir Contractor, Joshua M. Epstein, Michael W. Macy
2017	—	`conf`	Fast graph scan statistics optimization using algebraic fingerprints. IEEE BigData Jose Cadena, Saliya Ekanayake, Anil Vullikanti
2016	—	`conf`	Java thread and process performance for parallel machine learning on multicore HPC clusters. IEEE BigData Saliya Ekanayake, Supun Kamburugamuve, Pulasthi Wickramasinghe, Geoffrey C. Fox
2016	—	`conf`	SPIDAL Java: high performance data analytics with Java and MPI on large multicore HPC clusters. SpringSim (HPS) Saliya Ekanayake, Supun Kamburugamuve, Geoffrey C. Fox
2016	—	`conf`	TSmap3D: Browser visualization of high dimensional time series data. IEEE BigData Supun Kamburugamuve, Pulasthi Wickramasinghe, Saliya Ekanayake, Chathuri Wimalasena, Milinda Pathirage, Geoffrey C. Fox
2016	—	`conf`	Towards High Performance Processing of Streaming Data in Large Data Centers. IPDPS Workshops Supun Kamburugamuve, Saliya Ekanayake, Milinda Pathirage, Geoffrey C. Fox
2015	—	`conf`	Big Data, Simulations and HPC Convergence. WBDB Geoffrey C. Fox, Judy Qiu, Shantenu Jha, Saliya Ekanayake, Supun Kamburugamuve
2014	B	`conf`	Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions. CCGRID Yang Ruan, Geoffrey L. House, Saliya Ekanayake, Ursel Schutte, James D. Bever, Haixu Tang, Geoffrey C. Fox
2014	Misc	`conf`	Towards a Comprehensive Set of Big Data Benchmarks. High Performance Computing Workshop Geoffrey C. Fox, Shantenu Jha, Judy Qiu, Saliya Ekanayake, André Luckow
2014	J	`jnl`	Visualizing the Protein Sequence Universe. Concurr. Comput. Pract. Exp. Larissa Stanberry, Roger Higdon, Winston Haynes, Natali Kolker, William Broomall, Saliya Ekanayake, Adam Hughes, Yang Ruan, Judy Qiu, Eugene Kolker, Geoffrey C. Fox
2012	—	`conf`	DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences. BCB Yang Ruan, Saliya Ekanayake, Mina Rho, Haixu Tang, Seung-Hee Bae, Judy Qiu, Geoffrey C. Fox
2012	J	`jnl`	Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets. BMC Bioinform. Adam Hughes, Yang Ruan, Saliya Ekanayake, Seung-Hee Bae, Qunfeng Dong, Mina Rho, Judy Qiu, Geoffrey C. Fox
2010	J	`jnl`	Hybrid cloud and cluster computing paradigms for life science applications. BMC Bioinform. Judy Qiu, Jaliya Ekanayake, Thilina Gunarathne, Jong Youl Choi, Seung-Hee Bae, Hui Li, Bingjing Zhang, Tak-Lon Wu, Yang Ruan, Saliya Ekanayake, Adam Hughes, Geoffrey C. Fox
2010	B	`conf`	Performance of Windows Multicore Systems on Threading and MPI. CCGRID Judy Qiu, Scott Beason, Seung-Hee Bae, Saliya Ekanayake, Geoffrey C. Fox