Sagi Snir - RankMe

72 papers A* 3B 7C 6Misc 1Journal 43Unranked 11

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Simultaneous separation in bounded degree trees. CoRR Sagi Snir, Raphael Yuster
2026	J	`jnl`	Simultaneous separation in bounded degree trees. Discret. Appl. Math. Sagi Snir, Raphael Yuster
2025	B	`conf`	Untying Rates of Gene Gain and Loss Leads to a New Phylogenetic Approach. RECOMB Yoav Dvir, Sagi Snir
2024	J	`jnl`	Enforcing Temporal Consistency in Migration History Inference. J. Comput. Biol. Mrinmoy Saha Roddur, Sagi Snir, Mohammed El-Kebir
2024	—	`conf`	Gene-Adjacency-Based Phylogenetics Under a Stochastic Gain-Loss Model. RECOMB-CG Yoav Dvir, Shelly Brezner, Sagi Snir
2024	—	`conf`	On the Distribution of Synteny Blocks Under a Neutral Model of Genome Dynamics. RECOMB-CG Sagi Snir, Yuri I. Wolf, Shelly Brezner, Eugene V. Koonin, Mike A. Steel
2024	B	`conf`	Privacy Preserving Epigenetic PaceMaker: Stronger Privacy and Improved Efficiency. RECOMB Meir Goldenberg, Loay Mualem, Amit Shahar, Sagi Snir, Adi Akavia
2023	J	`jnl`	Identifying epigenetic aging moderators using the epigenetic pacemaker. Frontiers Bioinform. Colin Farrell, Chanyue Hu, Kalsuda Lapborisuth, Kyle Pu, Sagi Snir, Matteo Pellegrini
2023	C	`conf`	Inferring Temporally Consistent Migration Histories. WABI Mrinmoy Saha Roddur, Sagi Snir, Mohammed El-Kebir
2023	—	`conf`	Using Generating Functions to Prove Additivity of Gene-Neighborhood Based Phylogenetics - Extended Abstract. ISBRA Guy Katriel, Udi Mahanaymi, Christoph Koutschan, Doron Zeilberger, Mike A. Steel, Sagi Snir
2022	J	`jnl`	On the quartet distance given partial information. J. Graph Theory Sagi Snir, Osnat Weissberg, Raphael Yuster
2022	—	`conf`	Private Epigenetic PaceMaker Detector Using Homomorphic Encryption - Extended Abstract. ISBRA Meir Goldenberg, Sagi Snir, Adi Akavia
2021	J	`jnl`	On the quartet distance given partial information. CoRR Sagi Snir, Osnat Weissberg, Raphael Yuster
2020	J	`jnl`	Inference of mutability landscapes of tumors from single cell sequencing data. PLoS Comput. Biol. Viachaslau Tsyvina, Alex Zelikovsky, Sagi Snir, Pavel Skums
2020	J	`jnl`	The Epigenetic Pacemaker: modeling epigenetic states under an evolutionary framework. Bioinform. Colin Farrell, Sagi Snir, Matteo Pellegrini
2019	J	`jnl`	A New Quartet-Based Statistical Method for Comparing Sets of Gene Trees Is Developed Using a Generalized Hoeffding Inequality. J. Comput. Biol. Eliran Avni, Sagi Snir
2019	J	`jnl`	Bounds on Identification of Genome Evolution Pacemakers. J. Comput. Biol. Sagi Snir
2019	J	`jnl`	Extending the Evolvability Model to the Prokaryotic World: Simulations and Results on Real Data. J. Comput. Biol. Ben Yohay, Sagi Snir
2019	—	`conf`	Greedy Partition Distance Under Stochastic Models - Analytic Results. ISBRA Sagi Snir
2019	J	`jnl`	Prokaryotic evolutionary mechanisms accelerate learning. Discret. Appl. Math. Sagi Snir, Ben Yohay
2018	—	`conf`	Bounds on Identification of Genome Evolution Pacemakers. ISBRA Sagi Snir
2018	—	`conf`	Extending the Evolvability Model to the Prokaryotic World: Simulations and Results on Real Data. ISBRA Sagi Snir, Ben Yohay
2018	—	`conf`	Multi-SpaM: A Maximum-Likelihood Approach to Phylogeny Reconstruction Using Multiple Spaced-Word Matches and Quartet Trees. RECOMB-CG Thomas Dencker, Chris-André Leimeister, Michael Gerth, Christoph Bleidorn, Sagi Snir, Burkhard Morgenstern
2017	J	`jnl`	Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes. Bioinform. Dat Duong, Lisa Gai, Sagi Snir, Eun Yong Kang, Buhm Han, Jae Hoon Sul, Eleazar Eskin
2016	J	`jnl`	A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging. PLoS Comput. Biol. Sagi Snir, Bridgett M. Vonholdt, Matteo Pellegrini
2015	J	`jnl`	Detecting Horizontal Gene Transfer between Closely Related Taxa. PLoS Comput. Biol. Orit Adato, Noga Ninyo, Uri Gophna, Sagi Snir
2015	J	`jnl`	Gene-Gene Interactions Detection Using a Two-stage Model. J. Comput. Biol. Zhanyong Wang, Jae Hoon Sul, Sagi Snir, José Antonio Lozano, Eleazar Eskin
2014	B	`conf`	Gene-Gene Interactions Detection Using a Two-Stage Model. RECOMB Zhanyong Wang, Jae Hoon Sul, Sagi Snir, José Antonio Lozano, Eleazar Eskin
2014	J	`jnl`	On the Compatibility of Quartet Trees. SIAM J. Discret. Math. Noga Alon, Sagi Snir, Raphael Yuster
2014	A*	`conf`	On the compatibility of quartet trees. SODA Noga Alon, Sagi Snir, Raphael Yuster
2014	J	`jnl`	On the number of genomic pacemakers: a geometric approach. Algorithms Mol. Biol. Sagi Snir
2014	C	`conf`	Pacemaker Partition Identification. WABI Sagi Snir
2013	J	`jnl`	Recovering the Treelike Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis. J. Comput. Biol. Sebastien Roch, Sagi Snir
2012	J	`jnl`	Fast and reliable reconstruction of phylogenetic trees with indistinguishable edges. Random Struct. Algorithms Ilan Gronau, Shlomo Moran, Sagi Snir
2012	J	`jnl`	Reconstructing Approximate Phylogenetic Trees from Quartet Samples. SIAM J. Comput. Sagi Snir, Raphael Yuster
2012	B	`conf`	Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis. RECOMB Sebastien Roch, Sagi Snir
2012	J	`jnl`	Recovering the tree-like trend of evolution despite extensive lateral genetic transfer: A probabilistic analysis CoRR Sebastien Roch, Sagi Snir
2012	J	`jnl`	Universal Pacemaker of Genome Evolution. PLoS Comput. Biol. Sagi Snir, Yuri I. Wolf, Eugene V. Koonin
2011	—	`conf`	A Linear Time Approximation Scheme for Maximum Quartet Consistency on Sparse Sampled Inputs. APPROX-RANDOM Sagi Snir, Raphael Yuster
2011	J	`jnl`	A Linear Time Approximation Scheme for Maximum Quartet Consistency on Sparse Sampled Inputs. SIAM J. Discret. Math. Sagi Snir, Raphael Yuster
2011	J	`jnl`	Partial convex recolorings of trees and galled networks: Tight upper and lower bounds. ACM Trans. Algorithms Shlomo Moran, Sagi Snir, Wing-Kin Sung
2011	J	`jnl`	Tracing the Most Parsimonious Indel History. J. Comput. Biol. Sagi Snir, Lior Pachter
2010	J	`jnl`	A Novel Technique for Detecting Putative Horizontal Gene Transfer in the Sequence Space. J. Comput. Biol. Sagi Snir, Edward N. Trifonov
2010	J	`jnl`	Quartets MaxCut: A Divide and Conquer Quartets Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. Sagi Snir, Satish Rao
2010	A*	`conf`	Reconstructing Approximate Phylogenetic Trees from Quartet Samples. SODA Sagi Snir, Raphael Yuster
2009	J	`jnl`	Parsimony Score of Phylogenetic Networks: Hardness Results and a Linear-Time Heuristic. IEEE ACM Trans. Comput. Biol. Bioinform. Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
2009	J	`jnl`	The Net-HMM Approach: Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models. J. Bioinform. Comput. Biol. Sagi Snir, Tamir Tuller
2008	J	`jnl`	Convex recolorings of strings and trees: Definitions, hardness results and algorithms. J. Comput. Syst. Sci. Shlomo Moran, Sagi Snir
2008	A*	`conf`	Fast and reliable reconstruction of phylogenetic trees with very short edges. SODA Ilan Gronau, Shlomo Moran, Sagi Snir
2008	J	`jnl`	Hadamard Conjugation for the Kimura 3ST Model: Combinatorial Proof Using Path Sets. IEEE ACM Trans. Comput. Biol. Bioinform. Michael D. Hendy, Sagi Snir
2008	C	`conf`	Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models. WABI Sagi Snir, Tamir Tuller
2008	J	`jnl`	Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm. J. Comput. Biol. Sagi Snir, Tandy J. Warnow, Satish Rao
2007	—	`conf`	A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance. ISBRA Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
2007	Misc	`conf`	Connected Coloring Completion for General Graphs: Algorithms and Complexity. COCOON Benny Chor, Michael R. Fellows, Mark A. Ragan, Igor Razgon, Frances A. Rosamond, Sagi Snir
2007	J	`jnl`	Efficient approximation of convex recolorings. J. Comput. Syst. Sci. Shlomo Moran, Sagi Snir
2007	J	`jnl`	Efficient parsimony-based methods for phylogenetic network reconstruction. Bioinform. Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
2007	J	`jnl`	Incorporating homologues into Sequence Embeddings for protein Analysis. J. Bioinform. Comput. Biol. Eleazar Eskin, Sagi Snir
2007	J	`jnl`	Maximum likelihood of phylogenetic networks. Bioinform. Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
2007	J	`jnl`	Restricting SBH ambiguity via restriction enzymes. Discret. Appl. Math. Steven Skiena, Sagi Snir
2006	J	`jnl`	Maximum Likelihood Molecular Clock Comb: Analytic Solutions. J. Comput. Biol. Benny Chor, Amit Khetan, Sagi Snir
2006	J	`jnl`	Maximum likelihood of phylogenetic networks. Bioinform. Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
2006	B	`conf`	Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes. RECOMB Sagi Snir, Lior Pachter
2006	J	`jnl`	Using Max Cut to Enhance Rooted Trees Consistency. IEEE ACM Trans. Comput. Biol. Bioinform. Sagi Snir, Satish Rao
2005	B	`conf`	Convex Recolorings of Strings and Trees: Definitions, Hardness Results and Algorithms. WADS Shlomo Moran, Sagi Snir
2005	J	`jnl`	Efficient Approximation of Convex Recolorings CoRR Shlomo Moran, Sagi Snir
2005	—	`conf`	Efficient Approximation of Convex Recolorings. APPROX-RANDOM Shlomo Moran, Sagi Snir
2005	C	`conf`	The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space. CIBCB Eleazar Eskin, Sagi Snir
2005	C	`conf`	Using Semi-definite Programming to Enhance Supertree Resolvability. WABI Shlomo Moran, Satish Rao, Sagi Snir
2004	—	`—`	Computational issues in phylogenetic reconstruction : analytic maximum likelihood solutions and convex recoloring. Sagi Snir
2003	B	`conf`	Maximum likelihood on four taxa phylogenetic trees: analytic solutions. RECOMB Benny Chor, Amit Khetan, Sagi Snir
2002	C	`conf`	Restricting SBH Ambiguity via Restriction Enzymes. WABI Steven Skiena, Sagi Snir
2000	J	`jnl`	Simple and efficient network decomposition and synchronization. Theor. Comput. Sci. Shlomo Moran, Sagi Snir