Sabino Liuni

45 papers B 2Journal 41Unranked 2
YearRankTypeTitle / Venue / Authors
2020 J jnl
InteractomeSeq: a web server for the identification and profiling of domains and epitopes from phage display and next generation sequencing data.
Nucleic Acids Res.
Simone Puccio, Giorgio Grillo, Arianna Consiglio, Maria Felicia Soluri, Daniele Sblattero, Diego Cotella, Claudio Santoro, Sabino Liuni, Gianluca De Bellis, Enrico Lugli, Clelia Peano, Flavio Licciulli
2018 J jnl
Arena-Idb: a platform to build human non-coding RNA interaction networks.
BMC Bioinform.
Vincenzo Bonnici, Giorgio De Caro, Giorgio Constantino, Sabino Liuni, Domenica D'Elia, Nicola Bombieri, Flavio Licciulli, Rosalba Giugno
2018 J jnl
ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences.
Nucleic Acids Res.
Monica Santamaria, Bruno Fosso, Flavio Licciulli, Bachir Balech, Ilaria Larini, Giorgio Grillo, Giorgio De Caro, Sabino Liuni, Graziano Pesole
2017 J jnl
WoPPER: Web server for Position Related data analysis of gene Expression in Prokaryotes.
Nucleic Acids Res.
Simone Puccio, Giorgio Grillo, Flavio Licciulli, Marco Severgnini, Sabino Liuni, Silvio Bicciato, Gianluca De Bellis, Francesco Ferrari, Clelia Peano
2016 J jnl
A fuzzy method for RNA-Seq differential expression analysis in presence of multireads.
BMC Bioinform.
Arianna Consiglio, Corrado Mencar, Giorgio Grillo, Flaviana Marzano, Mariano Francesco Caratozzolo, Sabino Liuni
2015 — conf
Managing NGS Differential Expression Uncertainty with Fuzzy Sets.
CIBB
Arianna Consiglio, Corrado Mencar, Giorgio Grillo, Sabino Liuni
2012 J jnl
BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments.
BMC Bioinform.
Arianna Consiglio, Massimo Carella, Giorgio De Caro, Gianfranco Delle Foglie, Candida Giovannelli, Giorgio Grillo, Massimo Ianigro, Flavio Licciulli, Orazio Palumbo, Ada Piepoli, Elena Ranieri, Sabino Liuni
2012 J jnl
Reference databases for taxonomic assignment in metagenomics.
Briefings Bioinform.
Monica Santamaria, Bruno Fosso, Arianna Consiglio, Giorgio De Caro, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Graziano Pesole
2010 J jnl
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.
Briefings Bioinform.
David Stephen Horner, Giulio Pavesi, Tiziana Castrignanò, Paolo D'Onorio De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole
2010 J jnl
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Giorgio Grillo, Antonio Turi, Flavio Licciulli, Flavio Mignone, Sabino Liuni, Sandro Banfi, Vincenzo Alessandro Gennarino, David Stephen Horner, Giulio Pavesi, Ernesto Picardi, Graziano Pesole
2008 B conf
HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers.
CCGRID
Paolo D'Onorio De Meo, Danilo Carrabino, Mattia D'Antonio, Annarita D'Addabbo, Sabino Liuni, Flavio Mignone, Graziano Pesole, Nicola Ancona
2007 J jnl
A high performance grid-web service framework for the identification of 'conserved sequence tags'.
Future Gener. Comput. Syst.
Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole
2007 J jnl
Selection of relevant genes in cancer diagnosis based on their prediction accuracy.
Artif. Intell. Medicine
Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona
2007 J jnl
Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data.
Bioinform.
Rosalia Maglietta, Ada Piepoli, Domenico Catalano, Piepoli Licciulli, Massimo Carella, Sabino Liuni, Graziano Pesole, Francesco Perri, Nicola Ancona
2007 J jnl
p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining
BMC Bioinform.
Elisabetta Sbisà, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Antonio Turi, Sabino Liuni, Graziano Pesole, Anna De Grassi, Mariano Francesco Caratozzolo, Anna Maria D'Erchia, Beatriz Navarro, Apollonia Tullo, Cecilia Saccone, Andreas Gisel
2006 B conf
Classification error as a measure of gene relevance in cancer diagnosis.
IJCNN
Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona
2006 J jnl
GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.
Bioinform.
Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole
2006 J jnl
On the statistical assessment of classifiers using DNA microarray data.
BMC Bioinform.
Nicola Ancona, Rosalia Maglietta, Ada Piepoli, Annarita D'Addabbo, R. Cotugno, M. Savino, Sabino Liuni, Massimo Carella, Graziano Pesole, Francesco Perri
2005 J jnl
Regularized Least Squares Cancer Classifiers from DNA microarray data.
BMC Bioinform.
Nicola Ancona, Rosalia Maglietta, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole
2005 — conf
SVM and RLS Models for Cancer Classification.
Computational Intelligence
Nicola Ancona, Annarita D'Addabbo, Sabino Liuni, Graziano Pesole, Rosalia Maglietta
2005 J jnl
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Flavio Mignone, Giorgio Grillo, Flavio Licciulli, Michele Iacono, Sabino Liuni, Paul J. Kersey, Jorge Duarte, Cecilia Saccone, Graziano Pesole
2004 J jnl
CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.
Nucleic Acids Res.
Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole
2004 J jnl
DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions.
Bioinform.
Andreas Gisel, Maria Panetta, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Cecilia Saccone, Graziano Pesole
2003 J jnl
PLMItRNA, a database on the heterogeneous genetic origin of mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes.
Nucleic Acids Res.
Guglielmo Rainaldi, Mariateresa Volpicella, Flavio Licciulli, Sabino Liuni, Raffaele Gallerani, Luigi R. Ceci
2003 J jnl
PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences.
Nucleic Acids Res.
Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Elisabetta Sbisà, Graziano Pesole
2002 J jnl
MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002.
Nucleic Acids Res.
Marcella Attimonelli, Domenico Catalano, Carmela Gissi, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Monica Santamaria, Graziano Pesole, Cecilia Saccone
2002 J jnl
PLANT-PIs: a database for plant protease inhibitors and their genes.
Nucleic Acids Res.
Francesca De Leo, Mariateresa Volpicella, Flavio Licciulli, Sabino Liuni, Raffaele Gallerani, Luigi R. Ceci
2002 J jnl
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.
Nucleic Acids Res.
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Flavio Mignone, Carmela Gissi, Cecilia Saccone
2001 J jnl
PLMItRNA, a database for mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes.
Nucleic Acids Res.
Fabrizio Damiano, Raffaele Gallerani, Sabino Liuni, Flavio Licciulli, Luigi R. Ceci
2000 J jnl
MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins.
Nucleic Acids Res.
Graziano Pesole, Carmela Gissi, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marcella Attimonelli, Cecilia Saccone
2000 J jnl
PLMItRNA, a database for tRNAs and tRNA genes in plant mitochondria: enlargement and updating.
Nucleic Acids Res.
Vito Volpetti, Raffaele Gallerani, Caterina De Benedetto, Sabino Liuni, Flavio Licciulli, Luigi R. Ceci
2000 J jnl
PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance.
Bioinform.
Graziano Pesole, Sabino Liuni, Mark D'Souza
2000 J jnl
The Untranslated Regions of Eukaryotic MRNAs: Structure, Function, Evolution and Bioinformatic Tools for Their Analysis.
Briefings Bioinform.
Graziano Pesole, Giorgio Grillo, Alessandra Larizza, Sabino Liuni
2000 J jnl
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone
2000 J jnl
Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences.
Nucleic Acids Res.
Cecilia Lanave, Sabino Liuni, Flavio Licciulli, Marcella Attimonelli
1999 J jnl
PLMItRNA, a database for higher plant mitochondrial tRNAs and tRNA genes.
Nucleic Acids Res.
Luigi R. Ceci, Mariateresa Volpicella, Sabino Liuni, Vito Volpetti, Flavio Licciulli, Raffaele Gallerani
1999 J jnl
UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Matilde Ippedico, Alessandra Larizza, Wojciech Makalowski, Cecilia Saccone
1999 J jnl
Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences.
Nucleic Acids Res.
Cecilia Lanave, Marcella Attimonelli, Mariateresa De Robertis, Flavio Licciulli, Sabino Liuni, Elisabetta Sbisà, Cecilia Saccone
1998 J jnl
UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs.
Nucleic Acids Res.
Graziano Pesole, Sabino Liuni, Giorgio Grillo, Cecilia Saccone
1996 J jnl
CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases.
Comput. Appl. Biosci.
Giorgio Grillo, Marcella Attimonelli, Sabino Liuni, Graziano Pesole
1996 J jnl
Databases of MRNA Untranslated Regions for Metazoa.
Comput. Chem.
Graziano Pesole, Giorgio Grillo, Sabino Liuni
1993 J jnl
FASTPAT: a fast and efficient algorithm for string searching in DNA sequences.
Comput. Appl. Biosci.
N. Prunella, Sabino Liuni, Marcella Attimonelli, Graziano Pesole
1993 J jnl
SIMD parallelization of the WORDUP algorithm for detecting statistically significant patterns in DNA sequences.
Comput. Appl. Biosci.
Sabino Liuni, N. Prunella, Graziano Pesole, Tiziana D'Orazio, Ettore Stella, Arcangelo Distante
1992 J jnl
A simple method for global sequence comparison.
Nucleic Acids Res.
Elisabetta Pizzi, Marcella Attimonelli, Sabino Liuni, Clara Frontali, Cecilia Saccone
1990 J jnl
Detection of latent sequence periodicities.
Nucleic Acids Res.
Elisabetta Pizzi, Sabino Liuni, Clara Frontali