S. Cenk Sahinalp

11 papers B 3C 1Misc 1Journal 5Unranked 1
YearRankTypeTitle / Venue / Authors
2025 B conf
A Partition Function Algorithm to Evaluate Inferred Subclonal Structures in Single-Cell Sequencing Data.
RECOMB
Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, John D. Bridgers, Eva Pérez-Guijarro, Kerrie Marie, Howard H. Yang, Charli Gruen, Chih Hao Wu, Welles Robinson, Huaitian Liu, Can Kizilkale, Michael C. Kelly, Cari Smith, Sung Chin, Jessica Ebersole, Sandra Burkett, Aydin Buluç, Maxwell P. Lee, Erin K. Molloy, Teresa M. Przytycka, Glenn Merlino, Chi-Ping Day, Salem Malikic, Funda Ergün, S. Cenk Sahinalp
2025 J jnl
Fair molecular feature selection unveils universally tumor lineage-informative methylation sites in colorectal cancer.
Bioinform.
Xuan Cindy Li, Yuelin Liu, Alejandro A. Schäffer, Stephen M. Mount, S. Cenk Sahinalp
2025 C conf
Improved Algorithms for Bi-Partition Function Computation.
WABI
John D. Bridgers, Jan Hoinka, S. Cenk Sahinalp, Salem Malikic, Teresa M. Przytycka, Funda Ergün
2025 B conf
TX-Phase: Secure Phasing of Private Genomes in a Trusted Execution Environment.
RECOMB
Natnatee Dokmai, Kaiyuan Zhu, S. Cenk Sahinalp, Hyunghoon Cho
2024 J jnl
Biologically-informed killer cell immunoglobulin-like receptor gene annotation tool.
Bioinform.
Michael K. B. Ford, Ananth Hari, Qinghui Zhou, Ibrahim Numanagic, S. Cenk Sahinalp
2020 J jnl
SubGraph2Vec: Highly-Vectorized Tree-likeSubgraph Counting.
CoRR
Langshi Chen, Jiayu Li, Ariful Azad, S. Cenk Sahinalp, Madhav V. Marathe, Anil Vullikanti, Andrey Nikolaev, Egor Smirnov, Ruslan Israfilov, Judy Qiu
2019 Misc conf
Protecting Genomic Data Privacy with Probabilistic Modeling.
PSB
Sean Simmons, Bonnie Berger, S. Cenk Sahinalp
2019 — conf
SubGraph2Vec: Highly-Vectorized Tree-like Subgraph Counting.
IEEE BigData
Langshi Chen, Jiayu Li, S. Cenk Sahinalp, Madhav V. Marathe, Anil Vullikanti, Andrey Nikolaev, Egor Smirnov, Ruslan Israfilov, Judy Qiu
2018 J jnl
Preface: Selected Articles from RECOMB 2017.
J. Comput. Biol.
S. Cenk Sahinalp
2016 B conf
Enabling Privacy Preserving GWAS in Heterogeneous Human Populations.
RECOMB
Sean Simmons, S. Cenk Sahinalp, Bonnie Berger
2015 J jnl
Clonality inference in multiple tumor samples using phylogeny.
Bioinform.
Salem Malikic, Andrew W. McPherson, Nilgun Donmez, S. Cenk Sahinalp