S. Banu Ozkan

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
Topological metrics as evolutionary and dynamical descriptors of conformational landscapes within protein families.
PLoS Comput. Biol.
Nikhil Ramesh, S. Banu Ozkan, Eleni Panagiotou
2025 J jnl
Mamba time series forecasting with uncertainty propagation.
CoRR
Pedro Pessoa, Paul Campitelli, Douglas Shepherd, S. Banu Ozkan, Steve Pressé
2025 J jnl
Mamba time series forecasting with uncertainty quantification.
Mach. Learn. Sci. Technol.
Pedro Pessoa, Paul Campitelli, Douglas Shepherd, S. Banu Ozkan, Steve Pressé
2022 J jnl
Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants.
PLoS Comput. Biol.
Nicholas J. Ose, Brandon M. Butler, Avishek Kumar, I. Can Kazan, Maxwell D. Sanderford, Sudhir Kumar, S. Banu Ozkan
2020 J jnl
Allostery and Epistasis: Emergent Properties of Anisotropic Networks.
Entropy
Paul Campitelli, S. Banu Ozkan
2018 J jnl
Coevolving residues inform protein dynamics profiles and disease susceptibility of nSNVs.
PLoS Comput. Biol.
Brandon M. Butler, I. Can Kazan, Avishek Kumar, S. Banu Ozkan
2016 J jnl
Adaptive BP-Dock: An Induced Fit Docking Approach for Full Receptor Flexibility.
J. Chem. Inf. Model.
Ashini Bolia, S. Banu Ozkan
2014 J jnl
BP-Dock: A Flexible Docking Scheme for Exploring Protein-Ligand Interactions Based on Unbound Structures.
J. Chem. Inf. Model.
Ashini Bolia, Z. Nevin Gerek, S. Banu Ozkan
2012 J jnl
Collective Dynamics Differentiates Functional Divergence in Protein Evolution.
PLoS Comput. Biol.
Tyler J. Glembo, Daniel W. Farrell, Z. Nevin Gerek, M. F. Thorpe, S. Banu Ozkan
2011 J jnl
Change in Allosteric Network Affects Binding Affinities of PDZ Domains: Analysis through Perturbation Response Scanning.
PLoS Comput. Biol.
Z. Nevin Gerek, S. Banu Ozkan
2004 J jnl
Conformational search of peptides and proteins: Monte Carlo minimization with an adaptive bias method applied to the heptapeptide deltorphin.
J. Comput. Chem.
S. Banu Ozkan, Hagai Meirovitch