Rónán Daly

18 papers Misc 1Journal 16Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
TopNEXt: automatic DDA exclusion framework for multi-sample mass spectrometry experiments.
Bioinform.
Ross McBride, Joe Wandy, Stefan Weidt, Simon Rogers, Vinny Davies, Rónán Daly, Kevin Bryson
2022 J jnl
ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics.
J. Open Source Softw.
Joe Wandy, Vinny Davies, Ross McBride, Stefan Weidt, Simon Rogers, Rónán Daly
2021 J jnl
GraphOmics: an interactive platform to explore and integrate multi-omics data.
BMC Bioinform.
Joe Wandy, Rónán Daly
2021 J jnl
R package for statistical inference in dynamical systems using kernel based gradient matching: KGode.
Comput. Stat.
Mu Niu, Joe Wandy, Rónán Daly, Simon Rogers, Dirk Husmeier
2021 J jnl
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions.
PLoS Comput. Biol.
Grímur Hjörleifsson Eldjárn, Andrew Ramsay, Justin J. J. van der Hooft, Katherine R. Duncan, Sylvia Soldatou, Juho Rousu, Rónán Daly, Joe Wandy, Simon Rogers
2018 J jnl
MetaboCraft: building a Minecraft plugin for metabolomics.
Bioinform.
Anargyros Megalios, Rónán Daly, Karl E. V. Burgess
2018 J jnl
Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry.
Bioinform.
Joe Wandy, Yunfeng Zhu, Justin J. J. van der Hooft, Rónán Daly, Michael P. Barrett, Simon Rogers
2018 J jnl
ShinyKGode: an interactive application for ODE parameter inference using gradient matching.
Bioinform.
Joe Wandy, Mu Niu, Diana Giurghita, Rónán Daly, Simon Rogers, Dirk Husmeier
2017 J jnl
PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data.
Bioinform.
Yoann Gloaguen, Fraser R. Morton, Rónán Daly, Ross Gurden, Simon Rogers, Joe Wandy, David Wilson, Michael P. Barrett, Karl E. V. Burgess
2015 J jnl
Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets.
Bioinform.
Joe Wandy, Rónán Daly, Rainer Breitling, Simon Rogers
2014 J jnl
Learning Bayesian Network Equivalence Classes with Ant Colony Optimization.
CoRR
Rónán Daly, Qiang Shen
2014 J jnl
MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach.
Bioinform.
Rónán Daly, Simon Rogers, Joe Wandy, Andris Jankevics, Karl E. V. Burgess, Rainer Breitling
2012 J jnl
Cell Proliferation Tracking Using Graphene Sensor Arrays.
J. Sensors
Rónán Daly, Shishir Kumar, Gyongyi Lukacs, Kangho Lee, Anne Weidlich, Martin Hegner, Georg S. Duesberg
2011 J jnl
Learning Bayesian networks: approaches and issues.
Knowl. Eng. Rev.
Rónán Daly, Qiang Shen, J. Stuart Aitken
2009 J jnl
Learning Bayesian Network Equivalence Classes with Ant Colony Optimization.
J. Artif. Intell. Res.
Rónán Daly, Qiang Shen
2009 — conf
Using Higher-Order Dynamic Bayesian Networks to Model Periodic Data from the Circadian Clock of Arabidopsis Thaliana.
PRIB
Rónán Daly, Kieron D. Edwards, John S. O'Neill, J. Stuart Aitken, Andrew J. Millar, Mark A. Girolami
2006 Misc conf
Speeding up the learning of equivalence classes of bayesian network structures.
Artificial Intelligence and Soft Computing
Rónán Daly, Qiang Shen, J. Stuart Aitken
2005 J jnl
Inferring gene regulatory networks from classified microarray data: Initial results.
BMC Bioinform.
J. Stuart Aitken, Thanyaluk Jirapech-Umpai, Rónán Daly