Réka Albert - RankMe

49 papers C 1Journal 46Unranked 1

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	On the number of asynchronous attractors in AND-NOT Boolean networks. CoRR Van-Giang Trinh, Samuel Pastva, Jordan C. Rozum, Kyu Hyong Park, Réka Albert
2023	J	`jnl`	Inferring gene regulatory networks using transcriptional profiles as dynamical attractors. PLoS Comput. Biol. Ruihao Li, Jordan C. Rozum, Morgan M. Quail, Mohammad N. Qasim, Suzanne S. Sindi, Clarissa J. Nobile, Réka Albert, Aaron D. Hernday
2022	J	`jnl`	Whole community invasions and the integration of novel ecosystems. PLoS Comput. Biol. Colin Campbell, Laura Russo, Réka Albert, Angus Buckling, Katriona Shea
2022	J	`jnl`	pystablemotifs: Python library for attractor identification and control in Boolean networks. Bioinform. Jordan C. Rozum, Dávid Deritei, Kyu Hyong Park, Jorge Gómez Tejeda Zañudo, Réka Albert
2021	J	`jnl`	Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies. PLoS Comput. Biol. David J. Wooten, Jorge Gómez Tejeda Zañudo, David Murrugarra, Austin M. Perry, Anna Dongari-Bagtzoglou, Reinhard C. Laubenbacher, Clarissa J. Nobile, Réka Albert
2021	J	`jnl`	synergy: a Python library for calculating, analyzing and visualizing drug combination synergy. Bioinform. David J. Wooten, Réka Albert
2020	J	`jnl`	Introduction to the Special Section on Network Science in Biological and Bio-Inspired Systems. IEEE Trans. Netw. Sci. Eng. Gang Yan, Alex Arenas, Réka Albert
2020	J	`jnl`	Network model and analysis of the spread of Covid-19 with social distancing. Appl. Netw. Sci. Parul Maheshwari, Réka Albert
2019	J	`jnl`	A survey of some tensor analysis techniques for biological systems. Quant. Biol. Farzane Yahyanejad, Réka Albert, Bhaskar DasGupta
2019	J	`jnl`	Controlling the cell Cycle restriction Switch across the Information Gradient. Adv. Complex Syst. Jordan C. Rozum, Réka Albert
2019	J	`jnl`	Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling. PLoS Comput. Biol. Parul Maheshwari, Hao Du, Jen Sheen, Sarah M. Assmann, Réka Albert
2019	J	`jnl`	Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers. PLoS Comput. Biol. David J. Wooten, Sarah M. Groves, Darren R. Tyson, Qi Liu, Jing S. Lim, Réka Albert, Carlos F. Lopez, Julien Sage, Vito Quaranta
2018	J	`jnl`	Identifying (un)controllable dynamical behavior in complex networks. PLoS Comput. Biol. Jordan C. Rozum, Réka Albert
2018	J	`jnl`	Introduction to the Special Issue on Approaches to Control Biological and Biologically Inspired Networks. CoRR Réka Albert, John Baillieul, Adilson E. Motter
2018	J	`jnl`	Introduction to the Special Issue on Approaches to Control Biological and Biologically Inspired Networks. IEEE Trans. Control. Netw. Syst. Réka Albert, John Baillieul, Adilson E. Motter
2016	J	`jnl`	Analysis of a dynamic model of guard cell signaling reveals the stability of signal propagation. BMC Syst. Biol. Xiao Gan, Réka Albert
2016	J	`jnl`	Motif profile dynamics and transient species in a Boolean model of mutualistic ecological communities. J. Complex Networks Colin Campbell, Katriona Shea, Suann Yang, Réka Albert
2016	J	`jnl`	Node-independent elementary signaling modes: A measure of redundancy in Boolean signaling transduction networks. Netw. Sci. Zhongyao Sun, Réka Albert
2016	—	`ch.`	Quantification of Regulation in Networks with Positive and Negative Interaction Weights. Encyclopedia of Algorithms Colin Campbell, Réka Albert
2016	J	`jnl`	Structure-based control of complex networks with nonlinear dynamics. CoRR Jorge G. T. Zañudo, Gang Yang, Réka Albert
2015	J	`jnl`	Cell Fate Reprogramming by Control of Intracellular Network Dynamics. PLoS Comput. Biol. Jorge G. T. Zañudo, Réka Albert
2015	J	`jnl`	Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome. PLoS Comput. Biol. Steven N. Steinway, Matthew B. Biggs, Thomas P. Loughran Jr., Jason A. Papin, Réka Albert
2014	J	`jnl`	Multi-level Modeling of Light-Induced Stomatal Opening Offers New Insights into Its Regulation by Drought. PLoS Comput. Biol. Zhongyao Sun, Xiaofen Jin, Réka Albert, Sarah M. Assmann
2014	J	`jnl`	Stabilization of perturbed Boolean network attractors through compensatory interactions. BMC Syst. Biol. Colin Campbell, Réka Albert
2014	J	`jnl`	Topological implications of negative curvature for biological and social networks. CoRR Réka Albert, Bhaskar DasGupta, Nasim Mobasheri
2013	J	`jnl`	A Reduction Method for Boolean Network Models Proven to Conserve Attractors. SIAM J. Appl. Dyn. Syst. Assieh Saadatpour, Réka Albert, Timothy C. Reluga
2013	J	`jnl`	Clustering social networks using ant colony optimization. Oper. Res. Supreet Reddy Mandala, Soundar R. T. Kumara, Calyampudi Radhakrishna Rao, Réka Albert
2013	J	`jnl`	Minimal functional routes in directed graphs with dependent edges. Int. Trans. Oper. Res. Rui-Sheng Wang, Zhongyao Sun, Réka Albert
2013	J	`jnl`	Some Perspectives on Network Modeling in Therapeutic Target Prediction. CoRR Réka Albert, Bhaskar DasGupta, Nasim Mobasheri
2012	J	`jnl`	Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth. PLoS Comput. Biol. Juilee Thakar, Ashutosh K. Pathak, Lisa Murphy, Réka Albert, Isabella M. Cattadori
2012	J	`jnl`	Networks in Motion CoRR Adilson E. Motter, Réka Albert
2011	J	`jnl`	A New Computationally Efficient Measure of Topological Redundancy of Biological and Social Networks CoRR Réka Albert, Bhaskar DasGupta, Anthony Gitter, Gamze Gürsoy, Rashmi Hegde, Pradyut Paul, Gowri Sangeetha Sivanathan, Eduardo D. Sontag
2011	J	`jnl`	Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia. PLoS Comput. Biol. Assieh Saadatpour, Rui-Sheng Wang, Aijun Liao, Xin Liu, Thomas P. Loughran, István Albert, Réka Albert
2011	J	`jnl`	Elementary signaling modes predict the essentiality of signal transduction network components. BMC Syst. Biol. Rui-Sheng Wang, Réka Albert
2008	J	`jnl`	Boolean network simulations for life scientists. Source Code Biol. Medicine István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert
2008	J	`jnl`	Inferring (Biological) Signal Transduction Networks via Transitive Reductions of Directed Graphs. Algorithmica Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Eduardo D. Sontag
2008	J	`jnl`	NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks. Bioinform. Sema Kachalo, Ranran Zhang, Eduardo D. Sontag, Réka Albert, Bhaskar DasGupta
2007	C	`conf`	A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. WABI Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks
2007	J	`jnl`	A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. J. Comput. Biol. Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks
2007	J	`jnl`	Modeling Systems-Level Regulation of Host Immune Responses. PLoS Comput. Biol. Juilee Thakar, Mylisa Pilione, Girish Kirimanjeswara, Eric T. Harvill, Réka Albert
2007	J	`jnl`	Using Graph Concepts to Understand the Organization of Complex Systems. Int. J. Bifurc. Chaos Claire Christensen, Réka Albert
2006	J	`jnl`	Elucidation of directionality for co-expressed genes: predicting intra-operon termination sites. Bioinform. Anshuman Gupta, Costas D. Maranas, Réka Albert
2006	J	`jnl`	Inferring (Biological) Signal Transduction Networks via Transitive Reductions of Directed Graphs Electron. Colloquium Comput. Complex. Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Eduardo D. Sontag
2006	J	`jnl`	Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network. BMC Bioinform. Wen-Yu Chung, Réka Albert, István Albert, Anton Nekrutenko, Kateryna D. Makova
2006	—	`conf`	Structure and timescale analysis in genetic regulatory networks. CDC Madalena Chaves, Eduardo D. Sontag, Réka Albert
2004	J	`jnl`	Conserved network motifs allow protein-protein interaction prediction. Bioinform. István Albert, Réka Albert
2004	J	`jnl`	Survivability of Multiagent-Based Supply Networks: A Topological Perspective. IEEE Intell. Syst. Hari Prasad Thadakamalla, Usha Nandini Raghavan, Soundar R. T. Kumara, Réka Albert
2001	J	`jnl`	Statistical mechanics of complex networks CoRR Réka Albert, Albert-László Barabási
1999	J	`jnl`	The diameter of the world wide web CoRR Réka Albert, Hawoong Jeong, Albert-László Barabási