Ryan H. Lilien

24 papers A* 1B 4Journal 15Unranked 4

Year	Rank	Type	Title / Venue / Authors
2012	J	`jnl`	Efficient a Priori Identification of Drug Resistant Mutations Using Dead-End Elimination and MM-PBSA. J. Chem. Inf. Model. Maria Safi, Ryan H. Lilien
2011	J	`jnl`	Applying Medicinal Chemistry Transformations and Multiparameter Optimization to Guide the Search for High-Quality Leads and Candidates. J. Chem. Inf. Model. Matthew D. Segall, Edmund J. Champness, Chris Leeding, Ryan H. Lilien, Ramgopal R. Mettu, Brian W. Stevens
2011	J	`jnl`	Normalizing Molecular Docking Rankings using Virtually Generated Decoys. J. Chem. Inf. Model. Izhar Wallach, Navdeep Jaitly, Kong T. Nguyen, Matthieu Schapira, Ryan H. Lilien
2011	J	`jnl`	Virtual Decoy Sets for Molecular Docking Benchmarks. J. Chem. Inf. Model. Izhar Wallach, Ryan H. Lilien
2010	J	`jnl`	A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopy. Bioinform. Navdeep Jaitly, Marcus A. Brubaker, John L. Rubinstein, Ryan H. Lilien
2010	J	`jnl`	Restricted dead-end elimination: Protein redesign with a bounded number of residue mutations. J. Comput. Chem. Maria Safi, Ryan H. Lilien
2009	J	`jnl`	Predicting Multiple Ligand Binding Modes Using Self-Consistent Pharmacophore Hypotheses. J. Chem. Inf. Model. Izhar Wallach, Ryan H. Lilien
2009	J	`jnl`	Prediction of sub-cavity binding preferences using an adaptive physicochemical structure representation. Bioinform. Izhar Wallach, Ryan H. Lilien
2009	J	`jnl`	The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding. Bioinform. Izhar Wallach, Ryan H. Lilien
2008	B	`conf`	Adapting a single-user, single-display molecular visualization application for use in a multi-user, multi-display environment. AVI Clifton Forlines, Ryan H. Lilien
2008	J	`jnl`	The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles. J. Comput. Chem. Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald
2006	B	`conf`	A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles. RECOMB Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald
2006	—	`conf`	Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. ISMB (Supplement of Bioinformatics) Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald
2005	J	`jnl`	A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme. J. Comput. Biol. Ryan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald
2005	—	`conf`	High-throughput inference of protein-protein interfaces from unassigned NMR data. ISMB (Supplement of Bioinformatics) Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald
2004	J	`jnl`	A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments. J. Comput. Biol. Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald
2004	B	`conf`	A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme. RECOMB Ryan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald
2004	J	`jnl`	Optimization and dynamics of protein-protein complexes using B-splines. J. Comput. Chem. Richard E. Gillilan, Ryan H. Lilien
2003	—	`conf`	An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings. CSB Lincong Wang, Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald
2003	B	`conf`	Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. RECOMB Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald
2003	J	`jnl`	Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum. J. Comput. Biol. Ryan H. Lilien, Hany Farid, Bruce Randall Donald
2001	A*	`conf`	Physical Geometric Algorithms for Structural Molecular Biology. ICRA Bruce Randall Donald, Christopher Bailey-Kellogg, Jack Kelley, Ryan H. Lilien
1999	J	`jnl`	View-Based Recognition Using an Eigenspace Approximation to the Hausdorff Measure. IEEE Trans. Pattern Anal. Mach. Intell. Daniel P. Huttenlocher, Ryan H. Lilien, Clark F. Olson
1996	—	`conf`	Object Recognition Using Subspace Methods. ECCV (1) Daniel P. Huttenlocher, Ryan H. Lilien, Clark F. Olson