Ruy M. Ribeiro

14 papers Journal 12Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
A multiscale model of the action of a capsid assembly modulator for the treatment of chronic hepatitis B.
PLoS Comput. Biol.
Sarafa A. Iyaniwura, Tyler Cassidy, Ruy M. Ribeiro, Alan S. Perelson
2025 J jnl
Roadmap for using large language models (LLMs) to accelerate cross-disciplinary research with an example from computational biology.
CoRR
Ruian Ke, Ruy M. Ribeiro
2024 J jnl
How robust are estimates of key parameters in standard viral dynamic models?
PLoS Comput. Biol.
Carolin Zitzmann, Ruian Ke, Ruy M. Ribeiro, Alan S. Perelson
2024 J jnl
Modeling dynamics of acute HIV infection incorporating density-dependent cell death and multiplicity of infection.
PLoS Comput. Biol.
Ellie Mainou, Ruy M. Ribeiro, Jessica M. Conway
2023 J jnl
Forecasting Large Realized Covariance Matrices: The Benefits of Factor Models and Shrinkage.
CoRR
Rafael Alves, Diego S. de Brito, Marcelo C. Medeiros, Ruy M. Ribeiro
2021 J jnl
Zika virus dynamics: Effects of inoculum dose, the innate immune response and viral interference.
PLoS Comput. Biol.
Katharine Best, Dan H. Barouch, Jérémie Guedj, Ruy M. Ribeiro, Alan S. Perelson
2016 J jnl
Modeling the Effects of Morphine on Simian Immunodeficiency Virus Dynamics.
PLoS Comput. Biol.
Naveen K. Vaidya, Ruy M. Ribeiro, Alan S. Perelson, Anil Kumar
2014 J jnl
Antibody Responses during Hepatitis B Viral Infection.
PLoS Comput. Biol.
Stanca M. Ciupe, Ruy M. Ribeiro, Alan S. Perelson
2014 J jnl
Inferring Viral Dynamics in Chronically HCV Infected Patients from the Spatial Distribution of Infected Hepatocytes.
PLoS Comput. Biol.
Frederik Graw, Ashwin Balagopal, Abraham J. Kandathil, Stuart C. Ray, David L. Thomas, Ruy M. Ribeiro, Alan S. Perelson
2013 — conf
Parameter estimation and identifiability of a HIV-1 model.
MED
Ana Portêlo, João Miranda Lemos, Susana Vinga, Ruy M. Ribeiro, J. P. Cruz, Emília Valadas
2011 J jnl
Effect of 1918 PB1-F2 Expression on Influenza A Virus Infection Kinetics.
PLoS Comput. Biol.
Amber M. Smith, Frederick R. Adler, Julie L. McAuley, Ryan N. Gutenkunst, Ruy M. Ribeiro, Jonathan A. McCullers, Alan S. Perelson
2010 J jnl
Current Estimates for HIV-1 Production Imply Rapid Viral Clearance in Lymphoid Tissues.
PLoS Comput. Biol.
Rob J. De Boer, Ruy M. Ribeiro, Alan S. Perelson
2010 J jnl
Response network analysis of differential gene expression in human epithelial lung cells during avian influenza infections.
BMC Bioinform.
Ken Tatebe, Ahmet Zeytun, Ruy M. Ribeiro, Robert Hoffmann, Kevin S. Harrod, Christian V. Forst
2007 — conf
Towards Real Time Epidemiology: Data Assimilation, Modeling and Anomaly Detection of Health Surveillance Data Streams.
BioSurveillance
Luís M. A. Bettencourt, Ruy M. Ribeiro, Gerardo Chowell, Timothy Lant, Carlos Castillo-Chavez