Ruth Nussinov - RankMe

122 papers A 2B 5C 4Journal 102Unranked 8

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Cyclin-E/A/CDK1/2 Kinetic Landscapes Drive Cell Cycle Phase-Specific Progression and Guide Cyclin-E Degradation Strategy. J. Chem. Inf. Model. Wengang Zhang, Devin Bradburn, Yonglan Liu, Hyunbum Jang, Mardo Kõivomägi, Ruth Nussinov
2026	J	`jnl`	Repurposing AI for protein interactions and dynamics: opportunities, limitations, and lessons. Frontiers Bioinform. E. Sila Ozdemir, Hyunbum Jang, Ruth Nussinov, Attila Gürsoy, Ozlem Keskin
2025	J	`jnl`	Mutations in tumor signaling, metastases, and synthetic lethality establish distinct patterns. PLoS Comput. Biol. Bengi Ruken Yavuz, Ugur Sahin, Hyunbum Jang, Ruth Nussinov, Nurcan Tuncbag
2025	J	`jnl`	Prediction of Protein Three-dimensional Structures via a Hardware-Executable Quantum Computing Framework. CoRR Yuqi Zhang, Yuxin Yang, William Martin, Kingsten Lin, Zixu Wang, Cheng-Chang Lu, Weiwen Jiang, Ruth Nussinov, Joseph Loscalzo, Qiang Guan, Feixiong Cheng
2025	J	`jnl`	mTOR Variants Activation Discovers PI3K-like Cryptic Pocket, Expanding Allosteric, Mutant-Selective Inhibitor Designs. J. Chem. Inf. Model. Yonglan Liu, Wengang Zhang, Hyunbum Jang, Ruth Nussinov
2024	J	`jnl`	Allosteric Activation of RhoA Complexed with p115-RhoGEF Deciphered by Conformational Dynamics. J. Chem. Inf. Model. Nurit Haspel, Hyunbum Jang, Ruth Nussinov
2024	J	`jnl`	Capturing Autoinhibited PDK1 Reveals the Linker's Regulatory Role, Informing Innovative Inhibitor Design. J. Chem. Inf. Model. Liang Xu, Hyunbum Jang, Ruth Nussinov
2022	J	`jnl`	Accurate prediction of molecular properties and drug targets using a self-supervised image representation learning framework. Nat. Mac. Intell. Xiangxiang Zeng, Hongxin Xiang, Linhui Yu, Jianmin Wang, Kenli Li, Ruth Nussinov, Feixiong Cheng
2022	J	`jnl`	Deep learning for drug repurposing: methods, databases, and applications. CoRR Xiaoqin Pan, Xuan Lin, Dongsheng Cao, Xiangxiang Zeng, Philip S. Yu, Lifang He, Ruth Nussinov, Feixiong Cheng
2022	J	`jnl`	HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry. Bioinform. Hansaim Lim, Chung-Jung Tsai, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy
2022	J	`jnl`	Markov State Models and Molecular Dynamics Simulations Reveal the Conformational Transition of the Intrinsically Disordered Hypervariable Region of K-Ras4B to the Ordered Conformation. J. Chem. Inf. Model. Hao Zhang, Duan Ni, Jigang Fan, Minyu Li, Jian Zhang, Chen Hua, Ruth Nussinov, Shaoyong Lu
2022	J	`jnl`	SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions. Bioinform. Damla Ovek, Ameer Taweel, Zeynep Abali, Ece Tezsezen, Yunus Emre Koroglu, Chung-Jung Tsai, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy
2021	J	`jnl`	A network-based deep learning methodology for stratification of tumor mutations. Bioinform. Chuang Liu, Zhen Han, Zi-Ke Zhang, Ruth Nussinov, Feixiong Cheng
2021	—	`conf`	Antigen Binding Reshapes Antibody Energy Landscape and Conformation Dynamics. BIBM Kazi Lutful Kabir, Ruth Nussinov, Buyong Ma, Amarda Shehu
2021	J	`jnl`	MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphanization. J. Chem. Inf. Model. Tian Cai, Hansaim Lim, Kyra Alyssa Abbu, Yue Qiu, Ruth Nussinov, Lei Xie
2020	J	`jnl`	Individualized genetic network analysis reveals new therapeutic vulnerabilities in 6, 700 cancer genomes. PLoS Comput. Biol. Chuang Liu, Junfei Zhao, Weiqiang Lu, Yao Dai, Jennifer Hockings, Yadi Zhou, Ruth Nussinov, Charis Eng, Feixiong Cheng
2020	J	`jnl`	Network-based prediction of drug-target interactions using an arbitrary-order proximity embedded deep forest. Bioinform. Xiangxiang Zeng, Siyi Zhu, Yuan Hou, Pengyue Zhang, Lang Li, Jing Li, L. Frank Huang, Stephen J. Lewis, Ruth Nussinov, Feixiong Cheng
2019	J	`jnl`	A component overlapping attribute clustering (COAC) algorithm for single-cell RNA sequencing data analysis and potential pathobiological implications. PLoS Comput. Biol. He Peng, Xiangxiang Zeng, Yadi Zhou, Defu Zhang, Ruth Nussinov, Feixiong Cheng
2019	J	`jnl`	Correction: Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers. PLoS Comput. Biol. Ruth Nussinov, Hyunbum Jang, Chung-Jung Tsai, Feixiong Cheng
2019	J	`jnl`	Protein ensembles link genotype to phenotype. PLoS Comput. Biol. Ruth Nussinov, Chung-Jung Tsai, Hyunbum Jang
2019	J	`jnl`	Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers. PLoS Comput. Biol. Ruth Nussinov, Hyunbum Jang, Chung-Jung Tsai, Feixiong Cheng
2019	J	`jnl`	deepDR: a network-based deep learning approach to in silico drug repositioning. Bioinform. Xiangxiang Zeng, Siyi Zhu, Xiangrong Liu, Yadi Zhou, Ruth Nussinov, Feixiong Cheng
2017	J	`jnl`	Computing the Dynamic Supramolecular Structural Proteome. PLoS Comput. Biol. Ruth Nussinov, Jason A. Papin, Ilya A. Vakser
2017	J	`jnl`	How can computation advance microbiome research? PLoS Comput. Biol. Ruth Nussinov, Jason A. Papin
2017	J	`jnl`	Network approaches and applications in biology. PLoS Comput. Biol. Trey Ideker, Ruth Nussinov
2017	J	`jnl`	Structural host-microbiota interaction networks. PLoS Comput. Biol. Emine Guven-Maiorov, Chung-Jung Tsai, Ruth Nussinov
2016	J	`jnl`	Allostery: An Overview of Its History, Concepts, Methods, and Applications. PLoS Comput. Biol. Jin Liu, Ruth Nussinov
2016	J	`jnl`	Computing Biology. PLoS Comput. Biol. Ruth Nussinov, Jason A. Papin
2016	J	`jnl`	Genome Landscapes of Disease: Strategies to Predict the Phenotypic Consequences of Human Germline and Somatic Variation. PLoS Comput. Biol. Rachel Karchin, Ruth Nussinov
2016	J	`jnl`	Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics. PLoS Comput. Biol. Tatiana Maximova, Ryan Moffatt, Buyong Ma, Ruth Nussinov, Amarda Shehu
2015	J	`jnl`	Advancements and Challenges in Computational Biology. PLoS Comput. Biol. Ruth Nussinov
2015	J	`jnl`	Computational Methods for Exploration and Analysis of Macromolecular Structure and Dynamics. PLoS Comput. Biol. Amarda Shehu, Ruth Nussinov
2015	J	`jnl`	Coupling of Zinc-Binding and Secondary Structure in Nonfibrillar Aβ40 Peptide Oligomerization. J. Chem. Inf. Model. Liang Xu, Shengsheng Shan, Yonggang Chen, Xiaojuan Wang, Ruth Nussinov, Buyong Ma
2015	J	`jnl`	Defining the Domain Arrangement of the Mammalian Target of Rapamycin Complex Component Rictor Protein. J. Comput. Biol. Ping Zhou, Ning Zhang, Ruth Nussinov, Buyong Ma
2015	J	`jnl`	From "What Is?" to "What Isn't?" Computational Biology. PLoS Comput. Biol. Ruth Nussinov, Sebastian Bonhoeffer, Jason A. Papin, Olaf Sporns
2015	J	`jnl`	How to Write a Presubmission Inquiry. PLoS Comput. Biol. Thomas Lengauer, Ruth Nussinov
2015	J	`jnl`	Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary Algorithm. PLoS Comput. Biol. Rudy Clausen, Buyong Ma, Ruth Nussinov, Amarda Shehu
2014	J	`jnl`	A Unified View of "How Allostery Works". PLoS Comput. Biol. Chung-Jung Tsai, Ruth Nussinov
2014	J	`jnl`	MIMTool: A Tool for Drawing Molecular Interaction Maps. CoRR Mine Edes, Can C. Özturan, Türkan Haliloglu, Augustin Luna, Ruth Nussinov
2014	J	`jnl`	Making Biomolecular Simulations Accessible in the Post-Nobel Prize Era. PLoS Comput. Biol. Qiang Cui, Ruth Nussinov
2014	J	`jnl`	PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes. Nucleic Acids Res. Alper Baspinar, Engin Cukuroglu, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy
2014	J	`jnl`	The Significance of the 2013 Nobel Prize in Chemistry and the Challenges Ahead. PLoS Comput. Biol. Ruth Nussinov
2014	J	`jnl`	The Structural Basis of ATP as an Allosteric Modulator. PLoS Comput. Biol. Shaoyong Lu, Wenkang Huang, Qi Wang, Qiancheng Shen, Shuai Li, Ruth Nussinov, Jian Zhang
2014	J	`jnl`	The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer. PLoS Comput. Biol. Saliha Ece Acuner Ozbabacan, Attila Gürsoy, Ruth Nussinov, Ozlem Keskin
2013	J	`jnl`	Engineering strategy to improve peptide analogs: from structure-based computational design to tumor homing. J. Comput. Aided Mol. Des. David Zanuy, Francisco J. Sayago, Guillem Revilla-López, Gema Ballano, Lilach Agemy, Venkata Ramana Kotamraju, Ana I. Jiménez, Carlos Cativiela, Ruth Nussinov, April M. Sawvel, Galen Stucky, Erkki Ruoslahti, Carlos Alemán
2013	J	`jnl`	How Can PLoS Comput. Biol. Ruth Nussinov
2013	J	`jnl`	New Methods Section in PLoS Comput. Biol. Thomas Lengauer, Ruth Nussinov
2012	J	`jnl`	A Future Vision for PLoS Comput. Biol. Ruth Nussinov
2012	J	`jnl`	A Review of 2011 for PLoS Comput. Biol. Rosemary Dickin, Chris James Hall, Laura K. Taylor, Andrew M. Collings, Ruth Nussinov, Philip E. Bourne
2012	J	`jnl`	A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets. J. Chem. Inf. Model. Billur Engin, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy
2012	J	`jnl`	Conformational Control of the Binding of the Transactivation Domain of the MLL Protein and c-Myb to the KIX Domain of CREB. PLoS Comput. Biol. Elif Nihal Korkmaz, Ruth Nussinov, Türkan Haliloglu
2012	J	`jnl`	Structure and dynamics of molecular networks: A novel paradigm of drug discovery. A comprehensive review CoRR Peter Csermely, Tamás Korcsmáros, Huba J. M. Kiss, Gabor London, Ruth Nussinov
2011	J	`jnl`	A Formal MIM Specification and Tools for the Common Exchange of MIM Diagrams: an XML-Based Format, an API, and a Validation Method. BMC Bioinform. Augustin Luna, Evrim I. Karac, Margot Sunshine, Lucas Chang, Ruth Nussinov, Mirit I. Aladjem, Kurt W. Kohn
2011	J	`jnl`	A Review of 2010 for PLoS Comput. Biol. Rosemary Dickin, Cecy Marden, Andrew M. Collings, Ruth Nussinov, Philip E. Bourne
2011	J	`jnl`	A simulation strategy for the atomistic modeling of flexible molecules covalently tethered to rigid surfaces: Application to peptides. J. Comput. Chem. David Curcó, David Zanuy, Ruth Nussinov, Carlos Alemán
2011	J	`jnl`	GOSSIP: a method for fast and accurate global alignment of protein structures. Bioinform. Ilona Kifer, Ruth Nussinov, Haim J. Wolfson
2011	J	`jnl`	The Role of Response Elements Organization in Transcription Factor Selectivity: The IFN-β Enhanceosome Example. PLoS Comput. Biol. Yongping Pan, Ruth Nussinov
2010	J	`jnl`	A Mechanistic View of the Role of E3 in Sumoylation. PLoS Comput. Biol. Melda Tozluoglu, Ezgi Karaca, Ruth Nussinov, Türkan Haliloglu
2010	J	`jnl`	CCRXP: exploring clusters of conserved residues in protein structures. Nucleic Acids Res. Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov
2010	J	`jnl`	Conformational Profile of a Proline-Arginine Hybrid. J. Chem. Inf. Model. Guillem Revilla-López, Ana I. Jiménez, Carlos Cativiela, Ruth Nussinov, Carlos Alemán, David Zanuy
2010	J	`jnl`	FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking. Nucleic Acids Res. Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson
2010	J	`jnl`	Lysine120 Interactions with p53 Response Elements can Allosterically Direct p53 Organization. PLoS Comput. Biol. Yongping Pan, Ruth Nussinov
2009	J	`jnl`	A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. Briefings Bioinform. Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gürsoy, Ruth Nussinov
2009	J	`jnl`	Cooperativity Dominates the Genomic Organization of p53-Response Elements: A Mechanistic View. PLoS Comput. Biol. Yongping Pan, Ruth Nussinov
2009	J	`jnl`	Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications. J. Chem. Inf. Model. Oranit Dror, Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2009	J	`jnl`	Protein Segments with Conformationally Restricted Amino Acids Can Control Supramolecular Organization at the Nanoscale. J. Chem. Inf. Model. David Zanuy, Gema Ballano, Ana I. Jiménez, Jordi Casanovas, Nurit Haspel, Carlos Cativiela, David Curcó, Ruth Nussinov, Carlos Alemán
2009	J	`jnl`	RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases. Nucleic Acids Res. Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
2009	J	`jnl`	The Mechanism of Ubiquitination in the Cullin-RING E3 Ligase Machinery: Conformational Control of Substrate Orientation. PLoS Comput. Biol. Jin Liu, Ruth Nussinov
2008	J	`jnl`	Application of 1-Aminocyclohexane Carboxylic Acid to Protein Nanostructure Computer Design. J. Chem. Inf. Model. Francisco Rodríguez-Ropero, David Zanuy, Jordi Casanovas, Ruth Nussinov, Carlos Alemán
2008	—	`conf`	Bio-geometry: challenges, approaches, and future opportunities in proteomics and drug discovery. Symposium on Solid and Physical Modeling Ruth Nussinov, Tao Ju, Talapady Bhat, Jack Snoeyink, Karthik Ramani
2008	J	`jnl`	Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules. J. Comput. Biol. Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2008	J	`jnl`	FireDock: a web server for fast interaction refinement in molecular docking. Nucleic Acids Res. Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson
2008	J	`jnl`	MolAxis: a server for identification of channels in macromolecules. Nucleic Acids Res. Eitan Yaffe, Dan Fishelovitch, Haim J. Wolfson, Dan Halperin, Ruth Nussinov
2008	J	`jnl`	MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions. Nucleic Acids Res. Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
2008	J	`jnl`	PharmaGist: a webserver for ligand-based pharmacophore detection. Nucleic Acids Res. Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2008	—	`ch.`	Principles of Protein Recognition and Properties of Protein-protein Interfaces. Protein-protein Interactions and Networks Ozlem Keskin, Attila Gürsoy, Ruth Nussinov
2008	J	`jnl`	Structural similarity of genetically interacting proteins. BMC Syst. Biol. Oranit Dror, Dina Schneidman-Duhovny, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson, Roded Sharan
2007	B	`conf`	Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. RECOMB Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson
2007	J	`jnl`	EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM Maps. IEEE ACM Trans. Comput. Biol. Bioinform. Keren Lasker, Oranit Dror, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
2007	J	`jnl`	Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR. PLoS Comput. Biol. Zengjian Hu, Donnell Bowen, William M. Southerland, Antonio del Sol, Yongping Pan, Ruth Nussinov, Buyong Ma
2006	J	`jnl`	A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. Bioinform. Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov
2006	J	`jnl`	Designing a Nanotube Using Naturally Occurring Protein Building Blocks. PLoS Comput. Biol. Chung-Jung Tsai, Jie Zheng, Ruth Nussinov
2006	J	`jnl`	The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Res. Oranit Dror, Ruth Nussinov, Haim J. Wolfson
2006	J	`jnl`	The Multiple Common Point Set Problem and Its Application to Molecule Binding Pattern Detection. J. Comput. Biol. Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
2005	—	`conf`	ARTS: alignment of RNA tertiary structures. ECCB/JBI Oranit Dror, Ruth Nussinov, Haim J. Wolfson
2005	C	`conf`	Discovery of Protein Substructures in EM Maps. WABI Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson
2005	—	`conf`	MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces. CompLife Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
2005	J	`jnl`	Multiple Docking for Protein Structure Prediction. Int. J. Robotics Res. Yuval Inbar, Haim J. Wolfson, Ruth Nussinov
2005	J	`jnl`	PRISM: protein interactions by structural matching. Nucleic Acids Res. Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy
2005	J	`jnl`	PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Res. Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson
2005	B	`conf`	Recognition of Binding Patterns Common to a Set of Protein Structures. RECOMB Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
2005	J	`jnl`	SiteEngines: recognition and comparison of binding sites and protein-protein interfaces. Nucleic Acids Res. Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
2004	J	`jnl`	BioInfo3D: a suite of tools for structural bioinformatics. Nucleic Acids Res. Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, Haim J. Wolfson
2004	J	`jnl`	FlexProt: Alignment of Flexible Protein Structures Without a Predefinition of Hinge Regions. J. Comput. Biol. Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
2004	C	`conf`	Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations. WABI Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson
2003	—	`conf`	MASS: multiple structural alignment by secondary structures. ISMB (Supplement of Bioinformatics) Oranit Dror, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson
2003	—	`conf`	Protein structure prediction via combinatorial assembly of sub-structural units. ISMB (Supplement of Bioinformatics) Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson
2002	C	`conf`	Efficient Unbound Docking of Rigid Molecules. WABI Dina Duhovny, Ruth Nussinov, Haim J. Wolfson
2002	C	`conf`	MultiProt - A Multiple Protein Structural Alignment Algorithm. WABI Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
2001	J	`jnl`	A hierarchical, building-block-based computational scheme for protein structure prediction. IBM J. Res. Dev. Chung-Jung Tsai, Buyong Ma, Yuk Yin Sham, Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov
2001	J	`jnl`	MUSTA - A General, Efficient, Automated Method for Multiple Structure Alignment and Detection of Common Motifs: Application to Proteins. J. Comput. Biol. Nathaniel Leibowitz, Ruth Nussinov, Haim J. Wolfson
2001	J	`jnl`	Protein flexibility and electrostatic interactions. IBM J. Res. Dev. Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov
2000	A	`conf`	Alignment of Flexible Protein Structures. ISMB Maxim Shatsky, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson
1999	A	`conf`	Multiple Structural Alignment and Core Detection by Geometric Hashing. ISMB Nathaniel Leibowitz, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson
1998	J	`jnl`	A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility. J. Comput. Biol. Bilha Sandak, Ruth Nussinov, Haim J. Wolfson
1998	—	`conf`	[Invited Lecture] Structural motifs in the interior and on the surfaces of protein monomers and at protein-protein interfaces. German Conference on Bioinformatics Ruth Nussinov, Raquel Norel, Bilha Sandak, George Verbitsky, Haim J. Wolfson
1996	B	`conf`	Docking of Conformationally Flexible Proteins. CPM Bilha Sandak, Ruth Nussinov, Haim J. Wolfson
1995	J	`jnl`	An automated computer vision and robotics-based technique for 3-D flexible biomolecular docking and matching. Comput. Appl. Biosci. Bilha Sandak, Ruth Nussinov, Haim J. Wolfson
1994	—	`conf`	Docking of protein molecules. ICPR (2) Daniel Fischer, Shuo L. Lin, Ruth Nussinov, Haim J. Wolfson
1993	B	`conf`	3-D Docking of Protein Molecules. CPM Daniel Fischer, Raquel Norel, Ruth Nussinov, Haim J. Wolfson
1992	B	`conf`	3-D Substructure Matching in Protein Molecules. CPM Daniel Fischer, Ruth Nussinov, Haim J. Wolfson
1991	J	`jnl`	Compositional variations in DNA sequences. Comput. Appl. Biosci. Ruth Nussinov
1991	J	`jnl`	Signals in DNA sequences and their potential properties. Comput. Appl. Biosci. Ruth Nussinov
1989	J	`jnl`	RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. Comput. Appl. Biosci. Shu-Yun Le, John Owens, Ruth Nussinov, Jih-Hsiang Chen, Bruce A. Shapiro, Jacob V. Maizel
1988	J	`jnl`	A fixed-point alignment technique for detection of recurrent and common sequence motifs associated with biological features. Comput. Appl. Biosci. John Owens, Devjani Chatterjee, Ruth Nussinov, Andrzej K. Konopka, Jacob V. Maizel
1988	J	`jnl`	An improved secondary structure computation method and its application to intervening sequence in the human alpha-likeglobin mRNA precursors. Comput. Appl. Biosci. Shu-Yun Le, Jih-Hsiang Chen, Ruth Nussinov, Jacob V. Maizel
1988	J	`jnl`	Locating alignments with k differences for nucleotide and amino acid sequences. Comput. Appl. Biosci. Gad M. Landau, Uzi Vishkin, Ruth Nussinov
1986	J	`jnl`	A sequence analysis system encompassing rules for DNA helical distortion. Nucleic Acids Res. Bruce A. Shapiro, Ruth Nussinov, Lewis E. Lipkin, Jacob V. Maizel
1986	J	`jnl`	An efficient string matching algorithm with k differences for nucleotide and amino acid sequences. Nucleic Acids Res. Gad M. Landau, Uzi Vishkin, Ruth Nussinov
1984	J	`jnl`	An accelerated algorithm for calculating the secondary structure of single stranded RNAs. Nucleic Acids Res. Eliahu Comay, Ruth Nussinov, Oded Comay
1982	J	`jnl`	Secondary structure model for the complete simian virus 50 late precursor mRNA. Nucleic Acids Res. Ruth Nussinov, Ignacio Tinoco Jr., A. B. Jacobson
1982	J	`jnl`	Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA. Nucleic Acids Res. Ruth Nussinov, Ignacio Tinoco Jr., A. B. Jacobson