Ruth E. Baker

33 papers Journal 30
YearRankTypeTitle / Venue / Authors
2026 J jnl
Learning functional components of PDEs from data using neural networks.
CoRR
Torkel E. Loman, Yurij Salmaniw, Antonio León Villares, José A. Carrillo, Ruth E. Baker
2026 J jnl
Parameter Identifiability, Parameter Estimation, and Model Prediction for Differential Equation Models.
SIAM Rev.
Matthew J. Simpson, Ruth E. Baker
2025 J jnl
A Nonlocal-to-Local Approach to Aggregation-Diffusion Equations.
SIAM Rev.
Carles Falcó, Ruth E. Baker, José A. Carrillo
2025 J jnl
Modelling collective invasion with reaction-diffusion equations: When does domain curvature matter?
Appl. Math. Lett.
J. J. Pollacco, Ruth E. Baker, Philip K. Maini
2024 J jnl
A Local Continuum Model of Cell-Cell Adhesion.
SIAM J. Appl. Math.
Carles Falcó, Ruth E. Baker, José A. Carrillo
2024 J jnl
Efficient multifidelity likelihood-free Bayesian inference with adaptive computational resource allocation.
J. Comput. Phys.
Thomas P. Prescott, David J. Warne, Ruth E. Baker
2024 J jnl
Travelling waves in a minimal go-or-grow model of cell invasion.
Appl. Math. Lett.
Carles Falcó, Rebecca M. Crossley, Ruth E. Baker
2022 J jnl
Efficient Bayesian inference for mechanistic modelling with high-throughput data.
PLoS Comput. Biol.
Simon Martina Perez, Heba Sailem, Ruth E. Baker
2022 J jnl
Multifidelity multilevel Monte Carlo to accelerate approximate Bayesian parameter inference for partially observed stochastic processes.
J. Comput. Phys.
David J. Warne, Thomas P. Prescott, Ruth E. Baker, Matthew J. Simpson
2022 J jnl
Rapid Bayesian Inference for Expensive Stochastic Models.
J. Comput. Graph. Stat.
David J. Warne, Ruth E. Baker, Matthew J. Simpson
2021 J jnl
Effects of different discretisations of the Laplacian upon stochastic simulations of reaction-diffusion systems on both static and growing domains.
J. Comput. Appl. Math.
Bartosz J. Bartmanski, Ruth E. Baker
2021 J jnl
Multifidelity Approximate Bayesian Computation with Sequential Monte Carlo Parameter Sampling.
SIAM/ASA J. Uncertain. Quantification
Thomas P. Prescott, Ruth E. Baker
2021 J jnl
Travelling waves in a free boundary mechanobiological model of an epithelial tissue.
Appl. Math. Lett.
Ryan J. Murphy, Pascal R. Buenzli, Ruth E. Baker, Matthew J. Simpson
2020 J jnl
Biologically-informed neural networks guide mechanistic modeling from sparse experimental data.
PLoS Comput. Biol.
John H. Lagergren, John T. Nardini, Ruth E. Baker, Matthew J. Simpson, Kevin B. Flores
2020 J jnl
Chaste: Cancer, Heart and Soft Tissue Environment.
J. Open Source Softw.
Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan
2020 J jnl
Global Dynamics of a Novel Delayed Logistic Equation Arising from Cell Biology.
J. Nonlinear Sci.
Ruth E. Baker, Gergely Röst
2020 J jnl
Multifidelity Approximate Bayesian Computation.
SIAM/ASA J. Uncertain. Quantification
Thomas P. Prescott, Ruth E. Baker
2020 J jnl
Pakman: a modular, efficient and portable tool for approximate Bayesian inference.
J. Open Source Softw.
Thomas Pak, Ruth E. Baker, Joe Pitt-Francis
2020 J jnl
StoSpa2: A C++ software package for stochastic simulations of spatially extended systems.
J. Open Source Softw.
Bartosz J. Bartmanski, Ruth E. Baker
2019 J jnl
Displacement of Transport Processes on Networked Topologies.
SIAM J. Appl. Math.
Daniel B. Wilson, Ruth E. Baker, Francis G. Woodhouse
2018 J jnl
Multilevel rejection sampling for approximate Bayesian computation.
Comput. Stat. Data Anal.
David J. Warne, Ruth E. Baker, Matthew J. Simpson
2018 J jnl
Robustly simulating biochemical reaction kinetics using multi-level Monte Carlo approaches.
J. Comput. Phys.
Christopher Lester, Christian A. Yates, Ruth E. Baker
2018 J jnl
The impact of temporal sampling resolution on parameter inference for biological transport models.
PLoS Comput. Biol.
Jonathan U. Harrison, Ruth E. Baker
2017 J jnl
Impact of implementation choices on quantitative predictions of cell-based computational models.
J. Comput. Phys.
Jochen Kursawe, Ruth E. Baker, Alexander G. Fletcher
2017 J jnl
Numerical Analysis of the Immersed Boundary Method for Cell-Based Simulation.
SIAM J. Sci. Comput.
Fergus R. Cooper, Ruth E. Baker, Alexander G. Fletcher
2017 — ch.
Turing's Theory of Morphogenesis: Where We Started, Where We Are and Where We Want to Go.
The Incomputable
Thomas E. Woolley, Ruth E. Baker, Philip K. Maini
2017 — ch.
Turing's theory of morphogenesis.
The Turing Guide
Thomas E. Woolley, Ruth E. Baker, Philip K. Maini
2016 — ch.
Turing's Theory of Developmental Pattern Formation.
The Once and Future Turing
Philip K. Maini, Thomas E. Woolley, Eamonn A. Gaffney, Ruth E. Baker
2015 J jnl
Capabilities and Limitations of Tissue Size Control through Passive Mechanical Forces.
PLoS Comput. Biol.
Jochen Kursawe, Pavel A. Brodskiy, Jeremiah J. Zartman, Ruth E. Baker, Alexander G. Fletcher
2013 J jnl
A Modified Oster-Murray-Harris Mechanical Model of Morphogenesis.
SIAM J. Appl. Math.
Benjamin L. Vaughan Jr., Ruth E. Baker, David Kay, Philip K. Maini
2013 J jnl
Multiple types of data are required to identify the mechanisms influencing the spatial expansion of melanoma cell colonies.
BMC Syst. Biol.
Katrina K. Treloar, Matthew J. Simpson, Parvathi Haridas, Kerry J. Manton, David I. Leavesley, Donald L. S. McElwain, Ruth E. Baker
2013 J jnl
Novel Methods for Analysing Bacterial Tracks Reveal Persistence in
PLoS Comput. Biol.
Gabriel Rosser, Alexander G. Fletcher, David A. Wilkinson, Jennifer A. de Beyer, Christian A. Yates, Judith P. Armitage, Philip K. Maini, Ruth E. Baker
2012 J jnl
Modelling Hair Follicle Growth Dynamics as an Excitable Medium.
PLoS Comput. Biol.
Philip J. Murray, Philip K. Maini, Maksim V. Plikus, Cheng-Ming Chuong, Ruth E. Baker