Russell Bowler

15 papers B 1Journal 12Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration.
PLoS Comput. Biol.
Cecilia Wieder, Juliette Cooke, Clément Frainay, Nathalie Poupin, Russell Bowler, Fabien Jourdan, Katerina J. Kechris, Rachel P. J. Lai, Timothy M. D. Ebbels
2023 J jnl
NetSHy: network summarization via a hybrid approach leveraging topological properties.
Bioinform.
Thao Vu, Elizabeth Litkowski, Weixuan Liu, Katherine A. Pratte, Leslie Lange, Russell Bowler, Farnoush Banaei Kashani, Katerina J. Kechris
2023 J jnl
TreeKernel: interpretable kernel machine tests for interactions between -omics and clinical predictors with applications to metabolomics and COPD phenotypes.
BMC Bioinform.
Charlie M. Carpenter, Lucas A. Gillenwater, Russell Bowler, Katerina J. Kechris, Debashis Ghosh
2022 — conf
Effective Subject Representation based on Multi-omics Disease Networks using Graph Embedding.
BIBM
Sundous Hussein, Thao Vu, Leslie Lange, Russell Bowler, Katerina J. Kechris, Farnoush Banaei Kashani
2022 B conf
Semi-supervised Embedding for Scalable and Accurate Time Series Clustering.
IEEE Big Data
Andrew Hill, Russell Bowler, Katerina J. Kechris, Farnoush Banaei Kashani
2022 J jnl
Significant Subgraph Detection in Multi-omics Networks for Disease Pathway Identification.
Frontiers Big Data
Mohamed Abdel-Hafiz, Mesbah Najafi, Shahab Helmi, Katherine A. Pratte, Yonghua Zhuang, Weixuan Liu, Katerina J. Kechris, Russell Bowler, Leslie Lange, Farnoush Banaei Kashani
2022 J jnl
sJIVE: Supervised joint and individual variation explained.
Comput. Stat. Data Anal.
Elise F. Palzer, Christine Wendt, Russell Bowler, Craig P. Hersh, Sandra E. Safo, Eric F. Lock
2021 J jnl
Improved prediction of smoking status via isoform-aware RNA-seq deep learning models.
PLoS Comput. Biol.
Zifeng Wang, Aria Masoomi, Zhonghui Xu, Adel Boueiz, Sool Lee, Tingting Zhao, Russell Bowler, Michael H. Cho, Edwin K. Silverman, Craig P. Hersh, Jennifer G. Dy, Peter J. Castaldi
2021 J jnl
PaIRKAT: A pathway integrated regression-based kernel association test with applications to metabolomics and COPD phenotypes.
PLoS Comput. Biol.
Charlie M. Carpenter, Weiming Zhang, Lucas A. Gillenwater, Cameron Severn, Tusharkanti Ghosh, Russell Bowler, Katerina J. Kechris, Debashis Ghosh
2021 J jnl
sJIVE: Supervised Joint and Individual Variation Explained.
CoRR
Elise F. Palzer, Christine Wendt, Russell Bowler, Craig P. Hersh, Sandra E. Safo, Eric F. Lock
2019 — conf
The Utility of Shapelets for Analyzing Physical Activity of COPD Patients and non-COPD controls.
BIBM
Yuan An, Siling Chen, Nicholas Locantore, Matthew Allinder, Divya Mohan, Russell Bowler
2017 J jnl
The discordant method: a novel approach for differential correlation.
Bioinform.
Charlotte Siska, Russell Bowler, Katerina J. Kechris
2016 J jnl
The discordant method: a novel approach for differential correlation.
Bioinform.
Charlotte Siska, Russell Bowler, Katerina J. Kechris
2014 J jnl
Analyzing networks of phenotypes in complex diseases: methodology and applications in COPD.
BMC Syst. Biol.
Jen-hwa Chu, Craig P. Hersh, Peter J. Castaldi, Michael H. Cho, Benjamin A. Raby, Nan M. Laird, Russell Bowler, Stephen I. Rennard, Joseph Loscalzo, John Quackenbush, Edwin K. Silverman
2014 J jnl
MSPrep - Summarization, normalization and diagnostics for processing of mass spectrometry-based metabolomic data.
Bioinform.
Grant Hughes, Charmion Cruickshank-Quinn, Richard Reisdorph, Sharon Lutz, Irina Petrache, Nichole Reisdorph, Russell Bowler, Katerina J. Kechris