Russ B. Altman

255 papers A* 4A 16B 2Misc 68Journal 144Unranked 20
YearRankTypeTitle / Venue / Authors
2026 J jnl
FDARxBench: Benchmarking Regulatory and Clinical Reasoning on FDA Generic Drug Assessment.
CoRR
Betty Xiong, Jillian Fisher, Benjamin Newman, Meng Hu, Shivangi Gupta, Yejin Choi, Lanyan Fang, Russ B. Altman
2026 J jnl
Large language models can disambiguate opioid slang on social media.
CoRR
Kristy A. Carpenter, Issah A. Samori, Mathew V. Kiang, Keith Humphreys, Anna Lembke, Johannes C. Eichstaedt, Russ B. Altman
2025 J jnl
Monitoring the opioid epidemic via social media discussions.
npj Digit. Medicine
Delaney A. Smith, Adam Lavertu, Aadesh Salecha, Tymor Hamamsy, Keith Humphreys, Anna Lembke, Mathew V. Kiang, Russ B. Altman, Johannes C. Eichstaedt
2025 J jnl
Paying attention to attention: High attention sites as indicators of protein family and function in language models.
PLoS Comput. Biol.
Gowri Nayar, Alp Tartici, Russ B. Altman
2025 J jnl
Pool PaRTI: a PageRank-based pooling method for identifying critical residues and enhancing protein sequence representations.
Bioinform.
Alp Tartici, Gowri Nayar, Russ B. Altman
2025 J jnl
Semi-supervised data-integrated feature importance enhances performance and interpretability of biological classification tasks.
Bioinform.
Jun W. Kim, Russ B. Altman
2025 J jnl
The Human Omnibus of Targetable Pockets.
J. Cheminformatics
Kristy A. Carpenter, Russ B. Altman
2025 J jnl
Unsupervised learning reveals landscape of local structural motifs across protein classes.
Bioinform.
Alexander Derry, Haim Krupkin, Alp Tartici, Russ B. Altman
2024 J jnl
CRISPR-GPT: An LLM Agent for Automated Design of Gene-Editing Experiments.
CoRR
Kaixuan Huang, Yuanhao Qu, Henry Cousins, William A. Johnson, Di Yin, Mihir Shah, Denny Zhou, Russ B. Altman, Mengdi Wang, Le Cong
2024 J jnl
Data Ethics in the Era of Healthcare Artificial Intelligence in Africa: An Ubuntu Philosophy Perspective.
CoRR
Abdoul Jalil Djiberou Mahamadou, Aloysius Ochasi, Russ B. Altman
2024 J jnl
Elucidating the semantics-topology trade-off for knowledge inference-based pharmacological discovery.
J. Biomed. Semant.
Daniel N. Sosa, Georgiana Neculae, Julien Fauqueur, Russ B. Altman
2024 J jnl
Individual Fairness Through Reweighting and Tuning.
CoRR
Abdoul Jalil Djiberou Mahamadou, Lea Goetz, Russ B. Altman
2024 J jnl
Justice in Healthcare Artificial Intelligence in Africa.
CoRR
Aloysius Ochasi, Abdoul Jalil Djiberou Mahamadou, Russ B. Altman
2024 A* conf
Prospector Heads: Generalized Feature Attribution for Large Models & Data.
ICML
Gautam Machiraju, Alexander Derry, Arjun D. Desai, Neel Guha, Amir-Hossein Karimi, James Zou, Russ B. Altman, Christopher Ré, Parag Mallick
2024 J jnl
Prospector Heads: Generalized Feature Attribution for Large Models & Data.
CoRR
Gautam Machiraju, Alexander Derry, Arjun D. Desai, Neel Guha, Amir-Hossein Karimi, James Zou, Russ B. Altman, Christopher Ré, Parag Mallick
2024 J jnl
Toward a framework for risk mitigation of potential misuse of artificial intelligence in biomedical research.
Nat. Mac. Intell.
Artem A. Trotsyuk, Quinn Waeiss, Raina Talwar Bhatia, Brandon J. Aponte, Isabella M. L. Heffernan, Devika Madgavkar, Ryan Marshall Felder, Lisa Soleymani Lehmann, Megan J. Palmer, Hank Greely, Russell Wald, Lea Goetz, Markus Trengove, Robert Vandersluis, Herbert Lin, Mildred K. Cho, Russ B. Altman, Drew Endy, David A. Relman, Margaret Levi, Debra Satz, David Magnus
2023 J jnl
Associating biological context with protein-protein interactions through text mining at PubMed scale.
J. Biomed. Informatics
Daniel N. Sosa, Rogier Hintzen, Betty Xiong, Alex de Giorgio, Julien Fauqueur, Mark Davies, Jake Lever, Russ B. Altman
2023 — conf
Detecting Contradictory COVID-19 Drug Efficacy Claims from Biomedical Literature.
ACL (2)
Daniel N. Sosa, Malavika Suresh, Christopher Potts, Russ B. Altman
2023 J jnl
Gene set proximity analysis: expanding gene set enrichment analysis through learned geometric embeddings, with drug-repurposing applications in COVID-19.
Bioinform.
Henry Cousins, Taryn Hall, Yinglong Guo, Luke Tso, Kathy T. H. Tzeng, Le Cong, Russ B. Altman
2023 J jnl
POPDx: an automated framework for patient phenotyping across 392 246 individuals in the UK Biobank study.
J. Am. Medical Informatics Assoc.
Lu Yang, Sheng Wang, Russ B. Altman
2022 J jnl
Challenges and opportunities in network-based solutions for biological questions.
Briefings Bioinform.
Margaret G. Guo, Daniel N. Sosa, Russ B. Altman
2022 J jnl
Construction of disease-specific cytokine profiles by associating disease genes with immune responses.
PLoS Comput. Biol.
Tianyun Liu, Shiyin Wang, Michael Wornow, Russ B. Altman
2022 J jnl
Contexts and contradictions: a roadmap for computational drug repurposing with knowledge inference.
Briefings Bioinform.
Daniel N. Sosa, Russ B. Altman
2022 J jnl
Detecting Contradictory COVID-19 Drug Efficacy Claims from Biomedical Literature.
CoRR
Daniel N. Sosa, Malavika Suresh, Christopher Potts, Russ B. Altman
2022 J jnl
POPDx: An Automated Framework for Patient Phenotyping across 392, 246 Individuals in the UK Biobank Study.
CoRR
Lu Yang, Sheng Wang, Russ B. Altman
2021 — conf
ATOM3D: Tasks on Molecules in Three Dimensions.
NeurIPS Datasets and Benchmarks
Raphael J. L. Townshend, Martin Vögele, Patricia Suriana, Alexander Derry, Alexander S. Powers, Yianni Laloudakis, Sidhika Balachandar, Bowen Jing, Brandon M. Anderson, Stephan Eismann, Risi Kondor, Russ B. Altman, Ron O. Dror
2021 Misc conf
Drug Response Pharmacogenetics for 200, 000 UK Biobank Participants.
PSB
Gregory McInnes, Russ B. Altman
2021 J jnl
Large-scale labeling and assessment of sex bias in publicly available expression data.
BMC Bioinform.
Emily R. Flynn, Annie Chang, Russ B. Altman
2021 J jnl
Modeling drug response using network-based personalized treatment prediction (NetPTP) with applications to inflammatory bowel disease.
PLoS Comput. Biol.
Lichy Han, Zahra N. Sayyid, Russ B. Altman
2021 J jnl
On the Opportunities and Risks of Foundation Models.
CoRR
Rishi Bommasani, Drew A. Hudson, Ehsan Adeli, Russ B. Altman, Simran Arora, Sydney von Arx, Michael S. Bernstein, Jeannette Bohg, Antoine Bosselut, Emma Brunskill, Erik Brynjolfsson, Shyamal Buch, Dallas Card, Rodrigo Castellon, Niladri S. Chatterji, Annie S. Chen, Kathleen Creel, Jared Quincy Davis, Dorottya Demszky, Chris Donahue, Moussa Doumbouya, Esin Durmus, Stefano Ermon, John Etchemendy, Kawin Ethayarajh, Li Fei-Fei, Chelsea Finn, Trevor Gale, Lauren E. Gillespie, Karan Goel, Noah D. Goodman, Shelby Grossman, Neel Guha, Tatsunori Hashimoto, Peter Henderson, John Hewitt, Daniel E. Ho, Jenny Hong, Kyle Hsu, Jing Huang, Thomas Icard, Saahil Jain, Dan Jurafsky, Pratyusha Kalluri, Siddharth Karamcheti, Geoff Keeling, Fereshte Khani, Omar Khattab, Pang Wei Koh, Mark S. Krass, Ranjay Krishna, Rohith Kuditipudi, et al.
2021 Misc conf
Randomized user testing of recommender system clinical decision support.
AMIA
Andre Kumar, Rachael C. Aikens, Jason Horn, Lisa Shieh, Mark A. Musen, Michael T. M. Baiocchi, Russ B. Altman, Mary K. Goldstein, Steven M. Asch, Jonathan H. Chen
2021 J jnl
Repurposing biomedical informaticians for COVID-19.
J. Biomed. Informatics
Daniel N. Sosa, Binbin Chen, Amit Kaushal, Adam Lavertu, Jake Lever, Stefano E. Rensi, Russ B. Altman
2021 J jnl
Search and visualization of gene-drug-disease interactions for pharmacogenomics and precision medicine research using GeneDive.
J. Biomed. Informatics
Mike Wong, Paul Previde, Jack Cole, Brook Thomas, Nayana Laxmeshwar, Emily K. Mallory, Jake Lever, Dragutin Petkovic, Russ B. Altman, Anagha Kulkarni
2020 Misc conf
A Literature-Based Knowledge Graph Embedding Method for Identifying Drug RepurposingOpportunities in Rare Diseases.
PSB
Daniel N. Sosa, Alexander Derry, Margaret G. Guo, Eric Wei, Connor Brinton, Russ B. Altman
2020 J jnl
ATOM3D: Tasks On Molecules in Three Dimensions.
CoRR
Raphael J. L. Townshend, Martin Vögele, Patricia Suriana, Alexander Derry, Alexander S. Powers, Yianni Laloudakis, Sidhika Balachandar, Brandon M. Anderson, Stephan Eismann, Risi Kondor, Russ B. Altman, Ron O. Dror
2020 Misc ed.
Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2021
PSB
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Tiffany Murray, Teri E. Klein
2020 J jnl
Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks.
J. Am. Medical Informatics Assoc.
Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane
2020 J jnl
Extracting chemical reactions from text using Snorkel.
BMC Bioinform.
Emily K. Mallory, Matthieu de Rochemonteix, Alexander Ratner, Ambika Acharya, Christopher Ré, Roselie A. Bright, Russ B. Altman
2020 J jnl
Gaussian embedding for large-scale gene set analysis.
Nat. Mach. Intell.
Sheng Wang, Emily R. Flynn, Russ B. Altman
2020 J jnl
OrderRex clinical user testing: a randomized trial of recommender system decision support on simulated cases.
J. Am. Medical Informatics Assoc.
Andre Kumar, Rachael C. Aikens, Jason Hom, Lisa Shieh, Jonathan Chiang, David Morales, Divya Saini, Mark A. Musen, Michael T. M. Baiocchi, Russ B. Altman, Mary K. Goldstein, Steven M. Asch, Jonathan H. Chen
2020 Misc conf
PGxMine: Text Mining for Curation of PharmGKB.
PSB
Jake Lever, Julia M. Barbarino, Li Gong, Rachel Huddart, Katrin Sangkuhl, Ryan Whaley, Michelle Whirl Carrillo, Mark Woon, Teri E. Klein, Russ B. Altman
2020 Misc conf
Pathway and Network Embedding Methods for Prioritizing Psychiatric Drugs.
PSB
Yash Pershad, Margaret G. Guo, Russ B. Altman
2020 J jnl
Transfer learning enables prediction of CYP2D6 haplotype function.
PLoS Comput. Biol.
Gregory McInnes, Rachel Dalton, Katrin Sangkuhl, Michelle Whirl Carrillo, Seung-been Lee, Philip S. Tsao, Andrea Gaedigk, Russ B. Altman, Erica L. Woodahl
2019 Misc ed.
Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2019
PSB
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein
2019 Misc conf
Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic Subtypes using Convolutional Neural Networks.
AMIA
Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane
2019 J jnl
Computational analysis of kinase inhibitor selectivity using structural knowledge.
Bioinform.
Yu-Chen Lo, Tianyun Liu, Kari M. Morrissey, Satoko Kakiuchi-Kiyota, Adam R. Johnson, Fabio Broccatelli, Yu Zhong, Amita Joshi, Russ B. Altman
2019 B conf
GRep: Gene Set Representation via Gaussian Embedding.
RECOMB
Sheng Wang, Emily R. Flynn, Russ B. Altman
2019 J jnl
Graph Convolutional Neural Networks for Predicting Drug-Target Interactions.
J. Chem. Inf. Model.
Wen Torng, Russ B. Altman
2019 J jnl
High precision protein functional site detection using 3D convolutional neural networks.
Bioinform.
Wen Torng, Russ B. Altman
2019 J jnl
PathFXweb: a web application for identifying drug safety and efficacy phenotypes.
Bioinform.
Jennifer L. Wilson, Mike Wong, Ajinkya Chalke, Nicholas Stepanov, Dragutin Petkovic, Russ B. Altman
2019 J jnl
RedMed: Extending drug lexicons for social media applications.
J. Biomed. Informatics
Adam Lavertu, Russ B. Altman
2018 J jnl
A global network of biomedical relationships derived from text.
Bioinform.
Bethany Percha, Russ B. Altman
2018 J jnl
A probabilistic pathway score (PROPS) for classification with applications to inflammatory bowel disease.
Bioinform.
Lichy Han, Mateusz Maciejewski, Christoph Brockel, William Gordon, Scott B. Snapper, Joshua R. Korzenik, Lovisa Afzelius, Russ B. Altman
2018 Misc ed.
Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2018
PSB
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein
2018 Misc conf
Chemical reaction vector embeddings: towards predicting drug metabolism in the human gut microbiome.
PSB
Emily K. Mallory, Ambika Acharya, Stefano E. Rensi, Peter J Turnbaugh, Roselie A. Bright, Russ B. Altman
2018 J jnl
Data-driven human transcriptomic modules determined by independent component analysis.
BMC Bioinform.
Weizhuang Zhou, Russ B. Altman
2018 J jnl
Expanding a radiology lexicon using contextual patterns in radiology reports.
J. Am. Medical Informatics Assoc.
Bethany Percha, Yuhao Zhang, Selen Bozkurt, Daniel L. Rubin, Russ B. Altman, Curtis P. Langlotz
2018 Misc conf
GeneDive: A gene interaction search and visualization tool to facilitate precision medicine.
PSB
Paul Previde, Brook Thomas, Mike Wong, Emily K. Mallory, Dragutin Petkovic, Russ B. Altman, Anagha Kulkarni
2018 Misc conf
Improving the explainability of Random Forest classifier - user centered approach.
PSB
Dragutin Petkovic, Russ B. Altman, Mike Wong, Arthur Vigil
2018 J jnl
PathFX provides mechanistic insights into drug efficacy and safety for regulatory review and therapeutic development.
PLoS Comput. Biol.
Jennifer L. Wilson, Rebecca Racz, Tianyun Liu, Oluseyi Adeniyi, Jielin Sun, Anuradha Ramamoorthy, Michael Pacanowski, Russ B. Altman
2018 Misc conf
Unraveling the Molecular Basis of Lung Adenocarcinoma Dedifferentiation and Prognosis by Integrating Omics and Histopathology.
AMIA
Kun-Hsing Yu, Gerald J. Berry, Daniel L. Rubin, Christopher Ré, Russ B. Altman, Michael Snyder
2017 J jnl
3D deep convolutional neural networks for amino acid environment similarity analysis.
BMC Bioinform.
Wen Torng, Russ B. Altman
2017 Misc ed.
Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2017
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein
2017 — conf
Decaying Relevance of Clinical Data when Predicting Future Decisions.
CRI
Muthuraman Alagappan, Mary K. Goldstein, Steven M. Asch, Russ B. Altman, Jonathan H. Chen
2017 J jnl
Decaying relevance of clinical data towards future decisions in data-driven inpatient clinical order sets.
Int. J. Medical Informatics
Jonathan H. Chen, Muthuraman Alagappan, Mary K. Goldstein, Steven M. Asch, Russ B. Altman
2017 J jnl
Development of an automated assessment tool for MedWatch reports in the FDA adverse event reporting system.
J. Am. Medical Informatics Assoc.
Lichy Han, Robert Ball, Carol A. Pamer, Russ B. Altman, Scott Proestel
2017 J jnl
Imputing gene expression to maximize platform compatibility.
Bioinform.
Weizhuang Zhou, Lichy Han, Russ B. Altman
2017 Misc conf
Predicting Non-Small Cell Lung Cancer Diagnosis and Prognosis by Fully Automated Microscopic Pathology Image Features.
AMIA
Kun-Hsing Yu, Ce Zhang, Gerald J. Berry, Russ B. Altman, Christopher Ré, Daniel L. Rubin, Michael Snyder
2017 J jnl
Predicting inpatient clinical order patterns with probabilistic topic models vs conventional order sets.
J. Am. Medical Informatics Assoc.
Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Lester W. Mackey, Russ B. Altman
2017 J jnl
Shallow Representation Learning via Kernel PCA Improves QSAR Modelability.
J. Chem. Inf. Model.
Stefano E. Rensi, Russ B. Altman
2016 — conf
Automated Organization of Electronic Health Record Data by Probabilistic Topic Modeling to Inform Clinical Decision Making.
CRI
Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Lester W. Mackey, Russ B. Altman
2016 Misc ed.
Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2016
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie
2016 J jnl
Computing disease incidence, prevalence and comorbidity from electronic medical records.
J. Biomed. Informatics
Steven C. Bagley, Russ B. Altman
2016 J jnl
Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants.
PLoS Comput. Biol.
Steven C. Bagley, Marina Sirota, Richard O. Chen, Atul J. Butte, Russ B. Altman
2016 J jnl
Current Progress in Bioinformatics 2016.
Briefings Bioinform.
Russ B. Altman
2016 Misc conf
Dynamically Evolving Clinical Practices and Implications for Predicting Medical Decisions.
PSB
Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Russ B. Altman
2016 J jnl
Large-scale extraction of gene interactions from full-text literature using DeepDive.
Bioinform.
Emily K. Mallory, Ce Zhang, Christopher Ré, Russ B. Altman
2016 J jnl
OrderRex: clinical order decision support and outcome predictions by data-mining electronic medical records.
J. Am. Medical Informatics Assoc.
Jonathan H. Chen, Tanya Podchiyska, Russ B. Altman
2016 J jnl
STAMS: STRING-assisted module search for genome wide association studies and application to autism.
Bioinform.
Sara Hillenmeyer, Lea K. Davis, Eric R. Gamazon, Edwin H. Cook Jr., Nancy J. Cox, Russ B. Altman
2016 Misc conf
Separating the Causes and Consequences in Disease Transcriptome.
PSB
Yong Fuga Li, Fuxiao Xin, Russ B. Altman
2016 — conf
The Many Meanings of Precision Medicine.
CRI
Anthony E. Solomonides, Russ B. Altman, Joshua C. Denny, Larry Ozeran, Jessica D. Tenenbaum
2016 Misc conf
Usability of an Automated Recommender System for Clinical Order Entry.
AMIA
Jonathan H. Chen, Mary K. Goldstein, Steven M. Asch, Russ B. Altman
2015 Misc conf
A Twentieth Anniversary Tribute to PSB.
Pacific Symposium on Biocomputing
Darla Hewett, Michelle Whirl Carrillo, Lawrence E. Hunter, Russ B. Altman, Teri E. Klein
2015 J jnl
An ontology for Autism Spectrum Disorder (ASD) to infer ASD phenotypes from Autism Diagnostic Interview-Revised data.
J. Biomed. Informatics
Omri Mugzach, Mor Peleg, Steven C. Bagley, Stephen J. Guter, Edwin H. Cook Jr., Russ B. Altman
2015 Misc ed.
Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2015
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie
2015 J jnl
High Resolution Prediction of Calcium-Binding Sites in 3D Protein Structures Using FEATURE.
J. Chem. Inf. Model.
Weizhuang Zhou, Grace W. Tang, Russ B. Altman
2015 J jnl
Learning the Structure of Biomedical Relationships from Unstructured Text.
PLoS Comput. Biol.
Bethany Percha, Russ B. Altman
2015 J jnl
Relating Essential Proteins to Drug Side-Effects Using Canonical Component Analysis: A Structure-Based Approach.
J. Chem. Inf. Model.
Tianyun Liu, Russ B. Altman
2015 Misc conf
Training the Next Generation of Quantitative Biologists in the Era of Big Data.
Pacific Symposium on Biocomputing
Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Kevin Bretonnel Cohen, Elizabeth Wethington, Carsten Görg, Lawrence E. Hunter, Spencer V. Muse, Predrag Radivojac, Jason H. Moore
2015 J jnl
Variations in the Binding Pocket of an Inhibitor of the Bacterial Division Protein FtsZ across Genotypes and Species.
PLoS Comput. Biol.
Amanda Miguel, Jen Hsin, Tianyun Liu, Grace W. Tang, Russ B. Altman, Kerwyn Casey Huang
2014 Misc conf
"Doctors who ordered this also ordered..." Automated physician order recommendations and outcome predictions by data-mining electronic medical records.
AMIA
Jonathan H. Chen, Russ B. Altman
2014 Misc ed.
Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2014
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie
2014 Misc conf
Building the Next Generation of Quantitative Biologists.
Pacific Symposium on Biocomputing
Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Lawrence E. Hunter, David A. Ross, James A. Foster, Jason H. Moore
2014 J jnl
Environmental and State-Level Regulatory Factors Affect the Incidence of Autism and Intellectual Disability.
PLoS Comput. Biol.
Andrey Rzhetsky, Steven C. Bagley, Kanix Wang, Christopher S. Lyttle, Edwin H. Cook Jr., Russ B. Altman, Robert D. Gibbons
2014 J jnl
Knowledge-based Fragment Binding Prediction.
PLoS Comput. Biol.
Grace W. Tang, Russ B. Altman
2014 Misc conf
PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants.
Pacific Symposium on Biocomputing
Roxana Daneshjou, Zachary Zappala, Kimberly R. Kukurba, Sean M. Boyle, Kelly E. Ormond, Teri E. Klein, Michael Snyder, Carlos D. Bustamante, Russ B. Altman, Stephen B. Montgomery
2013 J jnl
A Probabilistic Algorithm for Calculating Structure: Borrowing from Simulated Annealing
CoRR
Russ B. Altman
2013 Misc ed.
Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2013
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2013 J jnl
Correspondence: Response to 'Use of an algorithm for identifying hidden drug-drug interactions in adverse event reports' by Gooden
J. Am. Medical Informatics Assoc.
Nicholas P. Tatonetti, Joshua C. Denny, Russ B. Altman
2013 Misc conf
Expanding the Autism Ontology to DSM-IV Criteria.
AMIA
Omri Mugzach, Mor Peleg, Steven C. Bagley, Russ B. Altman
2013 Misc conf
Inferring the semantic relationships of words within an ontology using random indexing: applications to pharmacogenomics.
AMIA
Bethany Percha, Russ B. Altman
2013 J jnl
K-Means for Parallel Architectures Using All-Prefix-Sum Sorting and Updating Steps.
IEEE Trans. Parallel Distributed Syst.
Kai J. Kohlhoff, Vijay S. Pande, Russ B. Altman
2013 J jnl
Probabilistic Constraint Satisfaction with Non-Gaussian Noise
CoRR
Russ B. Altman, Cheng Che Chen, William B. Poland, Jaswinder Pal Singh
2013 J jnl
Using Molecular Features of Xenobiotics to Predict Hepatic Gene Expression Response.
J. Chem. Inf. Model.
Guy Haskin Fernald, Russ B. Altman
2013 J jnl
Web-scale pharmacovigilance: listening to signals from the crowd.
J. Am. Medical Informatics Assoc.
Ryen W. White, Nicholas P. Tatonetti, Nigam H. Shah, Russ B. Altman, Eric Horvitz
2012 J jnl
A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports.
J. Am. Medical Informatics Assoc.
Nicholas P. Tatonetti, Guy Haskin Fernald, Russ B. Altman
2012 Misc ed.
Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2012
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2012 J jnl
Chapter 7: Pharmacogenomics.
PLoS Comput. Biol.
Konrad J. Karczewski, Roxana Daneshjou, Russ B. Altman
2012 Misc conf
Discovery and Explanation of Drug-Drug Interactions via Text Mining.
Pacific Symposium on Biocomputing
Bethany Percha, Yael Garten, Russ B. Altman
2012 J jnl
Editorial: Current progress in Bioinformatics 2012.
Briefings Bioinform.
Russ B. Altman
2012 Misc conf
Interpretome: A Freely Available, Modular, and Secure Personal Genome Interpretation Engine.
Pacific Symposium on Biocomputing
Konrad J. Karczewski, Robert P. Tirrell, Pablo Cordero, Nicholas P. Tatonetti, Joel T. Dudley, Keyan Salari, Michael Snyder, Russ B. Altman, Stuart K. Kim
2012 J jnl
Introduction to Translational Bioinformatics Collection.
PLoS Comput. Biol.
Russ B. Altman
2012 J jnl
Simbios: an NIH national center for physics-based simulation of biological structures.
J. Am. Medical Informatics Assoc.
Scott L. Delp, Joy P. Ku, Vijay S. Pande, Michael A. Sherman, Russ B. Altman
2012 Misc conf
Systems Pharmacogenomics-Bridging the Gap.
Pacific Symposium on Biocomputing
Marylyn D. Ritchie, Nancy J. Cox, Cheng Cheng, Scott Weiss, Teri E. Klein, Russ B. Altman
2012 J jnl
The state of the art in text mining and natural language processing for pharmacogenomics.
J. Biomed. Informatics
Adrien Coulet, K. Bretonnel Cohen, Russ B. Altman
2012 J jnl
Using ODIN for a PharmGKB revalidation experiment.
Database J. Biol. Databases Curation
Fabio Rinaldi, Simon Clematide, Yael Garten, Michelle Whirl Carrillo, Li Gong, Joan M. Hebert, Katrin Sangkuhl, Caroline F. Thorn, Teri E. Klein, Russ B. Altman
2011 J jnl
2010 Translational bioinformatics year in review.
J. Am. Medical Informatics Assoc.
Russ B. Altman, Katharine S. Miller
2011 Misc ed.
Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 3-7 January 2011
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2011 J jnl
Bioinformatics challenges for personalized medicine.
Bioinform.
Guy Haskin Fernald, Emidio Capriotti, Roxana Daneshjou, Konrad J. Karczewski, Russ B. Altman
2011 J jnl
Bioinformatics challenges for personalized medicine.
Bioinform.
Guy Haskin Fernald, Emidio Capriotti, Roxana Daneshjou, Konrad J. Karczewski, Russ B. Altman
2011 J jnl
CAMPAIGN: an open-source library of GPU-accelerated data clustering algorithms.
Bioinform.
Kai J. Kohlhoff, Marc H. Sosnick, William T. Hsu, Vijay S. Pande, Russ B. Altman
2011 J jnl
Fast Flexible Modeling of RNA Structure Using Internal Coordinates.
IEEE ACM Trans. Comput. Biol. Bioinform.
Samuel Coulbourn Flores, Michael A. Sherman, Christopher M. Bruns, Peter K. Eastman, Russ B. Altman
2011 J jnl
Improving the prediction of disease-related variants using protein three-dimensional structure.
BMC Bioinform.
Emidio Capriotti, Russ B. Altman
2011 J jnl
Integration and publication of heterogeneous text-mined relationships on the Semantic Web.
J. Biomed. Semant.
Adrien Coulet, Yael Garten, Michel Dumontier, Russ B. Altman, Mark A. Musen, Nigam H. Shah
2011 Misc conf
Structural insights into Pre-Translocation Ribosome Motions.
Pacific Symposium on Biocomputing
Samuel Coulbourn Flores, Russ B. Altman
2011 J jnl
Using Multiple Microenvironments to Find Similar Ligand-Binding Sites: Application to Kinase Inhibitor Binding.
PLoS Comput. Biol.
Tianyun Liu, Russ B. Altman
2010 J jnl
An integrative method for scoring candidate genes from association studies: application to warfarin dosing.
BMC Bioinform.
Nicholas P. Tatonetti, Joel Dudley, Hersh Sagreiya, Atul J. Butte, Russ B. Altman
2010 Misc ed.
Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2010 J jnl
Content-based microarray search using differential expression profiles.
BMC Bioinform.
Jesse M. Engreitz, Alexander A. Morgan, Joel Dudley, Rong Chen, Rahul Thathoo, Russ B. Altman, Atul J. Butte
2010 J jnl
Editorial: Current progress in Bioinformatics 2010.
Briefings Bioinform.
Russ B. Altman
2010 Misc conf
Extraction of Genotype-Phenotype-Drug Relationships from Text: From Entity Recognition to Bioinformatics Application.
Pacific Symposium on Biocomputing
Adrien Coulet, Nigam H. Shah, Lawrence Hunter, Chitta Baral, Russ B. Altman
2010 Misc conf
Improving the Prediction of Pharmacogenes Using Text-Derived Gene-Drug Relationships.
Pacific Symposium on Biocomputing
Yael Garten, Nicholas P. Tatonetti, Russ B. Altman
2010 J jnl
Independent component analysis: Mining microarray data for fundamental human gene expression modules.
J. Biomed. Informatics
Jesse M. Engreitz, Bernie J. Daigle Jr., Jonathan J. Marshall, Russ B. Altman
2010 Misc conf
Predicting RNA Structure by Multiple Template Homology Modeling.
Pacific Symposium on Biocomputing
Samuel Flores, Yaqi Wan, Rick Russell, Russ B. Altman
2010 J jnl
The utility of general purpose versus specialty clinical databases for research: Warfarin dose estimation from extracted clinical variables.
J. Biomed. Informatics
Hersh Sagreiya, Russ B. Altman
2010 J jnl
Using Pre-existing Microarray Datasets to Increase Experimental Power: Application to Insulin Resistance.
PLoS Comput. Biol.
Bernie J. Daigle Jr., Alicia Deng, Tracey McLaughlin, Samuel W. Cushman, Margaret C. Cam, Gerald Reaven, Philip S. Tsao, Russ B. Altman
2010 J jnl
Using text to build semantic networks for pharmacogenomics.
J. Biomed. Informatics
Adrien Coulet, Nigam H. Shah, Yael Garten, Mark A. Musen, Russ B. Altman
2009 Misc conf
A General Framework for Dose Optimization.
AMIA
Robert G. Turcott, Hersh Sagreiya, Euan A. Ashley, Russ B. Altman, Amar K. Das
2009 Misc ed.
Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2009 J jnl
Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models.
Bioinform.
Magdalena A. Jonikas, Randall J. Radmer, Russ B. Altman
2009 J jnl
Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text.
BMC Bioinform.
Yael Garten, Russ B. Altman
2009 — ed.
Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, DTMBIO 2009, Hong Kong, China, November 6, 2009
DTMBIO
Doheon Lee, Russ B. Altman, Min Song, Jun Huan
2009 Misc conf
Towards a Cytokine-Cell Interaction Knowledgebase of the Adaptive Immune System.
Pacific Symposium on Biocomputing
Shai Shen-Orr, Ofir Goldberger, Yael Garten, Yael Rosenberg-Hasson, Patricia A. Lovelace, David L. Hirschberg, Russ B. Altman, Mark M. Davis, Atul J. Butte
2008 Misc ed.
Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2008 Misc conf
Combining Molecular Dynamics and Machine Learning to Improve Protein Function Recognition.
Pacific Symposium on Biocomputing
Dariya S. Glazer, Randall J. Radmer, Russ B. Altman
2008 J jnl
Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops.
IEEE ACM Trans. Comput. Biol. Bioinform.
Peggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Landsberg, Russ B. Altman
2008 J jnl
M-BISON: Microarray-based integration of data sources using networks.
BMC Bioinform.
Bernie J. Daigle Jr., Russ B. Altman
2008 J jnl
MScanner: a classifier for retrieving Medline citations.
BMC Bioinform.
Graham L. Poulter, Daniel L. Rubin, Russ B. Altman, Cathal Seoighe
2008 — conf
Text mining for pharmacogenomics.
DTMBIO
Russ B. Altman
2008 J jnl
The Simbios National Center: Systems Biology in Motion.
Proc. IEEE
Jeanette P. Schmidt, Scott L. Delp, Michael A. Sherman, Charles A. Taylor, Vijay S. Pande, Russ B. Altman
2008 J jnl
The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge.
Nucleic Acids Res.
Tina Hernandez-Boussard, Michelle Whirl Carrillo, Joan M. Hebert, Li Gong, Ryan Owen, Mei Gong, Winston Gor, Feng Liu, Chuong Truong, Ryan Whaley, Mark Woon, Tina Zhou, Russ B. Altman, Teri E. Klein
2007 Misc ed.
Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2007
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein
2007 J jnl
Biomedical informatics training at Stanford in the 21st century.
J. Biomed. Informatics
Russ B. Altman, Teri E. Klein
2007 J jnl
Clustering protein environments for function prediction: finding PROSITE motifs in 3D.
BMC Bioinform.
Sungroh Yoon, Jessica C. Ebert, Eui-Young Chung, Giovanni De Micheli, Russ B. Altman
2007 — conf
Combining Simulation and Machine Learning to Recognize Function in 4D.
BIBM
Russ B. Altman
2007 J jnl
Current progress in bioinformatics 2007.
Briefings Bioinform.
Russ B. Altman
2007 — conf
Extracting Subject Demographic Information From Abstracts of Randomized Clinical Trial Reports.
MedInfo
Rong Xu, Yael Garten, Kaustubh S. Supekar, Amar K. Das, Russ B. Altman, Alan M. Garber
2007 J jnl
The International Society for Computational Biology 10th Anniversary.
PLoS Comput. Biol.
Lawrence Hunter, Russ B. Altman, Philip E. Bourne
2006 J jnl
Annual Progress in Bioinformatics 2006.
Briefings Bioinform.
Russ B. Altman
2006 Misc ed.
Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006
Pacific Symposium on Biocomputing
Russ B. Altman, Tiffany Murray, Teri E. Klein, A. Keith Dunker, Lawrence Hunter
2006 J jnl
Choosing Snps Using Feature Selection.
J. Bioinform. Comput. Biol.
Tu Minh Phuong, Zhen Lin, Russ B. Altman
2006 J jnl
Correction: Time to Organize the Bioinformatics Resourceome.
PLoS Comput. Biol.
Nicola Cannata, Emanuela Merelli, Russ B. Altman
2006 — conf
Physics-based simulation of biological structures.
ISBI
Scott L. Delp, F. Clayton Anderson, Russ B. Altman
2005 J jnl
Application of Information Technology: A Statistical Approach to Scanning the Biomedical Literature for Pharmacogenetics Knowledge.
J. Am. Medical Informatics Assoc.
Daniel L. Rubin, Caroline F. Thorn, Teri E. Klein, Russ B. Altman
2005 Misc ed.
Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005
Pacific Symposium on Biocomputing
Russ B. Altman, Tiffany A. Jung, Teri E. Klein, A. Keith Dunker, Lawrence Hunter
2005 J jnl
Biomedical term mapping databases.
Nucleic Acids Res.
Jonathan D. Wren, Jeffrey T. Chang, James Pustejovsky, Eytan Adar, Harold R. Garner, Russ B. Altman
2005 — conf
Challenges in Creating an Infrastructure for Physics-Based Simulation of Biological Structures.
CSB
Russ B. Altman
2005 — conf
Choosing SNPs Using Feature Selection.
CSB
Tu Minh Phuong, Zhen Lin, Russ B. Altman
2005 J jnl
Editorial: Annual progress in bioinformatics.
Briefings Bioinform.
Russ B. Altman
2005 Misc conf
Preface.
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2005 J jnl
Research Paper: Using Petri Net Tools to Study Properties and Dynamics of Biological Systems.
J. Am. Medical Informatics Assoc.
Mor Peleg, Daniel L. Rubin, Russ B. Altman
2005 J jnl
Time to Organize the Bioinformatics Resourceome.
PLoS Comput. Biol.
Nicola Cannata, Emanuela Merelli, Russ B. Altman
2004 — conf
A Resource to Acquire and Summarize Pharmacogenetics Knowledge in the Literature.
MedInfo
Daniel L. Rubin, Michelle Whirl Carrillo, Mark Woon, John Conroy, Teri E. Klein, Russ B. Altman
2004 Misc ed.
Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany A. Jung, Teri E. Klein
2004 J jnl
Computational functional genomics.
IEEE Signal Process. Mag.
Mike P. Liang, Olga G. Troyanskaya, Alain Laederach, Douglas L. Brutlag, Russ B. Altman
2004 J jnl
Editorial: Building successful biological databases.
Briefings Bioinform.
Russ B. Altman
2004 J jnl
GAPSCORE: finding gene and protein names one word at a time.
Bioinform.
Jeffrey T. Chang, Hinrich Schütze, Russ B. Altman
2004 — conf
Modeling and Analyzing Biomedical Processes using Workflow/Petri Net Models and Tools.
MedInfo
Mor Peleg, Samson W. Tu, Abhijit Manindroo, Russ B. Altman
2004 Misc conf
Preface.
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2004 J jnl
Tools for loading MEDLINE into a local relational database.
BMC Bioinform.
Diane E. Oliver, Gaurav Bhalotia, Ariel S. Schwartz, Russ B. Altman, Marti A. Hearst
2004 J jnl
White Paper: Training the Next Generation of Informaticians: The Impact of "BISTI" and Bioinformatics - A Report from the American College of Medical Informatics.
J. Am. Medical Informatics Assoc.
Charles P. Friedman, Russ B. Altman, Isaac S. Kohane, Kathleen A. McCormick, Perry L. Miller, Judy G. Ozbolt, Edward H. Shortliffe, Gary D. Stormo, M. Cleat Szczepaniak, David Tuck, Jeffrey J. Williamson
2003 — conf
A Personalized and Automated dbSNP Surveillance System.
CSB
Shuo Liu, Steve Lin, Mark Woon, Teri E. Klein, Russ B. Altman
2003 J jnl
A literature-based method for assessing the functional coherence of a gene group.
Bioinform.
Soumya Raychaudhuri, Russ B. Altman
2003 Misc conf
Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures.
Pacific Symposium on Biocomputing
Mike P. Liang, Douglas L. Brutlag, Russ B. Altman
2003 — conf
Automatic Construction of 3D Structural Motifs for Protein Function Prediction.
CSB
Mike P. Liang, Douglas L. Brutlag, Russ B. Altman
2003 J jnl
Complexities of Managing Biomedical Information.
OMICS
Russ B. Altman
2003 — conf
Edinburgh-Stanford TREC-2003 Genomics Track.
TREC
Miles Osborne, Mark Cuminskey, Gail Sinclair, Matthew Smillie, Bonnie L. Webber, Jeffrey T. Chang, Nipun Mehra, Veronica Rotemberg, Russ B. Altman
2003 J jnl
Inclusion of Textual Documentation in the Analysis of Multidimensional Data Sets: Application to Gene Expression Data.
Mach. Learn.
Soumya Raychaudhuri, Hinrich Schütze, Russ B. Altman
2003 J jnl
Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).
Bioinform.
Iwei Yeh, Peter D. Karp, Natalya Fridman Noy, Russ B. Altman
2003 J jnl
MutDB: annotating human variation with functionally relevant data.
Bioinform.
Sean D. Mooney, Russ B. Altman
2003 Misc conf
Preface.
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2003 Misc ed.
Proceedings of the 8th Pacific Symposium on Biocomputing, PSB 2003, Lihue, Hawaii, USA, January 3-7, 2003
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2003 J jnl
Recognizing Complex, Asymmetric Functional Sites in Protein Structures Using a Bayesian Scoring Function.
J. Bioinform. Comput. Biol.
Liping Wei, Russ B. Altman
2003 Misc conf
Special Paper - Introduction.
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2003 J jnl
WebFEATURE: an interactive web tool for identifying and visualizing functional sites on macromolecular structures.
Nucleic Acids Res.
Mike P. Liang, D. Rey Banatao, Teri E. Klein, Douglas L. Brutlag, Russ B. Altman
2002 Misc conf
Automating Data Acquisition into Ontologies from Pharmacogenetics Relational Data Sources Using Declarative Object Definitions and XML.
Pacific Symposium on Biocomputing
Daniel L. Rubin, Micheal Hewett, Diane E. Oliver, Teri E. Klein, Russ B. Altman
2002 J jnl
Emerging scientific applications in data mining.
Commun. ACM
Jiawei Han, Russ B. Altman, Vipin Kumar, Heikki Mannila, Daryl Pregibon
2002 J jnl
Modelling biological processes using workflow and Petri Net models.
Bioinform.
Mor Peleg, Iwei Yeh, Russ B. Altman
2002 J jnl
Nonparametric methods for identifying differentially expressed genes in microarray data.
Bioinform.
Olga G. Troyanskaya, Mitchell E. Garber, Patrick O. Brown, David Botstein, Russ B. Altman
2002 Misc conf
Ontology Development for a Pharmacogenetics Knowledge Base.
Pacific Symposium on Biocomputing
Diane E. Oliver, Daniel L. Rubin, Joshua M. Stuart, Micheal Hewett, Teri E. Klein, Russ B. Altman
2002 J jnl
PharmGKB: the Pharmacogenetics Knowledge Base.
Nucleic Acids Res.
Micheal Hewett, Diane E. Oliver, Daniel L. Rubin, Katrina L. Easton, Joshua M. Stuart, Russ B. Altman, Teri E. Klein
2002 Misc conf
Preface.
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2002 Misc ed.
Proceedings of the 7th Pacific Symposium on Biocomputing, PSB 2002, Lihue, Hawaii, USA, January 3-7, 2002
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2002 J jnl
Qualitative models of molecular function: linking genetic polymorphisms of tRNA to their functional sequelae.
Proc. IEEE
Mor Peleg, Irene S. Gabashvili, Russ B. Altman
2002 A conf
Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models.
ISMB
Daniel L. Rubin, Farhad Shafa, Diane E. Oliver, Micheal Hewett, Russ B. Altman
2002 J jnl
Research Paper: Creating an Online Dictionary of Abbreviations from MEDLINE.
J. Am. Medical Informatics Assoc.
Jeffrey T. Chang, Hinrich Schütze, Russ B. Altman
2002 Misc conf
Using binning to maintain confidentiality of medical data.
AMIA
Zhen Lin, Micheal Hewett, Russ B. Altman
2001 J jnl
Challenges for Intelligent Systems in Biology.
IEEE Intell. Syst.
Russ B. Altman, Alfonso Valencia, Satoru Miyano, Shoba Ranganathan
2001 A* conf
Challenges for knowledge discovery in biology.
KDD
Russ B. Altman
2001 J jnl
Constrained Global Optimization for Estimating Molecular Structure from Atomic Distances.
J. Comput. Biol.
Glenn A. Williams, Jonathan M. Dugan, Russ B. Altman
2001 Misc conf
Including Biological Literature Improves Homology Search.
Pacific Symposium on Biocomputing
Jeffrey T. Chang, Soumya Raychaudhuri, Russ B. Altman
2001 J jnl
Missing value estimation methods for DNA microarrays.
Bioinform.
Olga G. Troyanskaya, Michael N. Cantor, Gavin Sherlock, Patrick O. Brown, Trevor Hastie, Robert Tibshirani, David Botstein, Russ B. Altman
2001 Misc ed.
Proceedings of the 6th Pacific Symposium on Biocomputing, PSB 2001, Hawaii, USA, January 3-7, 2001
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
2001 Misc conf
Using Metacomputing Tools to Facilitate Large Scale Analyses of Biological Databases.
Pacific Symposium on Biocomputing
Allison Waugh, Glenn A. Williams, Liping Wei, Russ B. Altman
2001 Misc conf
ViewFeature: Integrated Feature Analysis and Visualization.
Pacific Symposium on Biocomputing
D. Rey Banatao, Conrad C. Huang, Patricia C. Babbitt, Russ B. Altman, Teri E. Klein
2000 A conf
Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains.
ISMB
Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu, Peter M. Small, Russ B. Altman
2000 A ed.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA
ISMB
Philip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig
2000 Misc conf
The new peer review.
AMIA
Isaac S. Kohane, Russ B. Altman
2000 J jnl
Viewpoint: The Interactions Between Clinical Informatics and Bioinformatics: A Case Study.
J. Am. Medical Informatics Assoc.
Russ B. Altman
1999 J jnl
AI in Medicine: The Spectrum of Challenges from Managed Care to Molecular Medicine.
AI Mag.
Russ B. Altman
1999 — conf
Biomolecular Structure Estimation: A Case Study of Irregular Hierarchical Parallelism.
PP
Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman
1999 J jnl
Model Formulation: Automated Diagnosis of Data-Model Conflicts Using Metadata.
J. Am. Medical Informatics Assoc.
Richard O. Chen, Russ B. Altman
1999 Misc ed.
Proceedings of the 4th Pacific Symposium on Biocomputing, PSB 1999, The Orchid at Mauna Lani, Big Island of Hawaii, USA, January 4-9, 1999
Pacific Symposium on Biocomputing
Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein
1999 J jnl
RiboWeb: An Ontology-Based System for Collaborative Molecular Biology.
IEEE Intell. Syst.
Russ B. Altman, Michael Bada, Xiaoqian J. Chai, Michelle Whirl Carrillo, Richard O. Chen, Neil F. Abernethy
1999 J jnl
Sophia: a flexible, Web-based knowledge server.
IEEE Intell. Syst.
Neil F. Abernethy, Julie J. Wu, Micheal Hewett, Russ B. Altman
1999 J jnl
Using imperfect secondary structure predictions to improve molecular structure computations.
Bioinform.
Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman
1998 A conf
A Surface Measure for Probabilistic Structural Computations.
ISMB
Jeanette P. Schmidt, Cheng Che Chen, Jonathan L. Cooper, Russ B. Altman
1998 J jnl
A curriculum for bioinformatics: the time is ripe.
Bioinform.
Russ B. Altman
1998 Misc conf
Bioinformatics in support of molecular medicine.
AMIA
Russ B. Altman
1998 — conf
Graphical style sheets: towards reusable representations of biomedical graphics.
CHI Conference Summary
Ramon M. Felciano, Russ B. Altman
1998 J jnl
Hierarchical Organization of Molecular Structure Computations.
J. Comput. Biol.
Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman
1998 Misc conf
MHCWeb: converting a WWW database into a knowledge-based collaborative environment.
AMIA
Lawrence S. Hon, Neil F. Abernethy, Vladimir Brusic, Jenny Chai, Russ B. Altman
1998 J jnl
Reuse, CORBA, and knowledge-based systems.
Int. J. Hum. Comput. Stud.
John H. Gennari, Heyning Cheng, Russ B. Altman, Mark A. Musen
1998 — conf
Sophia: Providing Basic Knowledge Services with a Common DBMS.
KRDB
Neil F. Abernethy, Russ B. Altman
1998 B conf
The hierarchical organization of molecular structure computations.
RECOMB
Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman
1998 Misc conf
Updating a bibliography using the related articles function within PubMed.
AMIA
Xuemin Liu, Russ B. Altman
1997 A conf
RIBOWEB: Linking Structural Computations to a Knowledge Base of Published Experimental Data.
ISMB
Richard O. Chen, Ramon M. Felciano, Russ B. Altman
1997 A conf
Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data.
ISMB
Russ B. Altman, Neil F. Abernethy, Richard O. Chen
1996 J jnl
Constraining volume by matching the moments of a distance distribution.
Comput. Appl. Biosci.
Cheng Che Chen, Richard O. Chen, Russ B. Altman
1996 A conf
Parallel Hierarchical Molecular Structure Estimation.
SC
Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman
1995 J jnl
A probabilistic approach to determining biological structure: integrating uncertain data sources.
Int. J. Hum. Comput. Stud.
Russ B. Altman
1995 A conf
Characterizing Oriented Protein Structural Sites Using Biochemical Properties.
ISMB
Steven C. Bagley, Liping Wei, Carol Cheng, Russ B. Altman
1995 A ed.
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995
ISMB
Christopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak
1995 — conf
Reuse with PROTÉgÉ-II: From Elevators to Ribosomes.
SSR
John H. Gennari, Russ B. Altman, Mark A. Musen
1995 J jnl
Using a measure of structural variation to define a core for the globins.
Comput. Appl. Biosci.
Mark Gerstein, Russ B. Altman
1994 A conf
Constraint Satisfaction Techniques for Modeling Large Complexes: Application to the Central Domain of 16S Ribosomal RNA.
ISMB
Russ B. Altman, Bryn Weiser, Harry F. Noller
1994 A conf
Finding an Average Core Structure: Application to the Globins.
ISMB
Russ B. Altman, Mark Gerstein
1994 A conf
Parallel protein structure determination from uncertain data.
SC
Cheng Che Chen, Jaswinder Pal Singh, William B. Poland, Russ B. Altman
1994 A conf
Probabilistic Constraint Satisfaction with Non-Gaussian Noise.
UAI
Russ B. Altman, Cheng Che Chen, William B. Poland, Jaswinder Pal Singh
1994 A ed.
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA
ISMB
Russ B. Altman, Douglas L. Brutlag, Peter D. Karp, Richard H. Lathrop, David B. Searls
1993 A conf
A Probabilistic Algorithm for Calculating Structure: Borrowing from Simulated Annealing.
UAI
Russ B. Altman
1993 A conf
Probabilistic Structure Calculations: A Three-Dimensional tRNA Structure from Sequence Correlation Data.
ISMB
Russ B. Altman
1988 J jnl
Heuristic refinement method for the derivation of protein solution structures: validation on cytochrome b562.
J. Chem. Inf. Comput. Sci.
James F. Brinkley, Russ B. Altman, Bruce S. Duncan, Bruce G. Buchanan, Oleg Jardetzky
1987 A* conf
Partial Compilation of Strategic Knowledge.
AAAI
Russ B. Altman, Bruce G. Buchanan
1986 A* conf
PROTEAN: Deriving Protein Structure from Constraints.
AAAI
Barbara Hayes-Roth, Bruce G. Buchanan, Olivier Lichtarge, Mike Hewitt, Russ B. Altman, James F. Brinkley, Craig Cornelius, Bruce S. Duncan, Oleg Jardetzky