Rune B. Lyngsø

32 papers A* 3A 1B 6C 3Journal 13
YearRankTypeTitle / Venue / Authors
2021 J jnl
KwARG: parsimonious reconstruction of ancestral recombination graphs with recurrent mutation.
Bioinform.
Anastasia Ignatieva, Rune B. Lyngsø, Paul A. Jenkins, Jotun Hein
2016 — ch.
RNA Secondary Structure Boltzmann Distribution.
Encyclopedia of Algorithms
Rune B. Lyngsø
2016 — ch.
RNA Secondary Structure Prediction Including Pseudoknots.
Encyclopedia of Algorithms
Rune B. Lyngsø
2016 — ch.
RNA Secondary Structure Prediction by Minimum Free Energy.
Encyclopedia of Algorithms
Rune B. Lyngsø
2015 J jnl
Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs.
BMC Bioinform.
Joseph L. Herman, Ádám Novák, Rune B. Lyngsø, Adrienn Szabó, István Miklós, Jotun Hein
2013 J jnl
Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information.
Bioinform.
James W. J. Anderson, Pierre A. Haas, Leigh-Anne Mathieson, Vladimir Volynkin, Rune B. Lyngsø, Paula Tataru, Jotun Hein
2012 J jnl
Evolving stochastic context-free grammars for RNA secondary structure prediction.
BMC Bioinform.
James W. J. Anderson, Paula Tataru, Joe Staines, Jotun Hein, Rune B. Lyngsø
2012 J jnl
Frnakenstein: multiple target inverse RNA folding.
BMC Bioinform.
Rune B. Lyngsø, James W. J. Anderson, Elena Sizikova, Amarendra Badugu, Tomas Hyland, Jotun Hein
2012 A* conf
Synthesising graphics card programs from DSLs.
PLDI
Luke Cartey, Rune B. Lyngsø, Oege de Moor
2010 J jnl
Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity.
BMC Bioinform.
Márton Münz, Rune B. Lyngsø, Jotun Hein, Philip C. Biggin
2008 B conf
Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony.
RECOMB
Rune B. Lyngsø, Yun S. Song, Jotun Hein
2008 — ch.
RNA Secondary Structure Boltzmann Distribution.
Encyclopedia of Algorithms
Rune B. Lyngsø
2008 — ch.
RNA Secondary Structure Prediction Including Pseudoknots.
Encyclopedia of Algorithms
Rune B. Lyngsø
2008 — ch.
RNA Secondary Structure Prediction by Minimum Free Energy.
Encyclopedia of Algorithms
Rune B. Lyngsø
2008 J jnl
StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees.
Bioinform.
Ádám Novák, István Miklós, Rune B. Lyngsø, Jotun Hein
2006 J jnl
Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yun S. Song, Rune B. Lyngsø, Jotun Hein
2006 C conf
How Many Transcripts Does It Take to Reconstruct the Splice Graph?
WABI
Paul A. Jenkins, Rune B. Lyngsø, Jotun Hein
2005 C conf
Minimum Recombination Histories by Branch and Bound.
WABI
Rune B. Lyngsø, Yun S. Song, Jotun Hein
2005 J jnl
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.
Bioinform.
Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin
2005 J jnl
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
Nucleic Acids Res.
Jakob Hull Havgaard, Rune B. Lyngsø, Jan Gorodkin
2004 A* conf
Complexity of Pseudoknot Prediction in Simple Models.
ICALP
Rune B. Lyngsø
2002 A* conf
Solving the String Statistics Problem in Time O(n log n).
ICALP
Gerth Stølting Brodal, Rune B. Lyngsø, Anna Östlin, Christian N. S. Pedersen
2002 J jnl
The consensus string problem and the complexity of comparing hidden Markov models.
J. Comput. Syst. Sci.
Rune B. Lyngsø, Christian N. S. Pedersen
2001 C conf
Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar.
WABI
Arun K. Jagota, Rune B. Lyngsø, Christian N. S. Pedersen
2001 B conf
Complexity of Comparing Hidden Markov Models.
ISAAC
Rune B. Lyngsø, Christian N. S. Pedersen
2000 B conf
Pseudoknots in RNA secondary structures.
RECOMB
Rune B. Lyngsø, Christian N. S. Pedersen
2000 J jnl
RNA Pseudoknot Prediction in Energy-Based Models.
J. Comput. Biol.
Rune B. Lyngsø, Christian N. S. Pedersen
1999 J jnl
Fast evaluation of internal loops in RNA secondary structure prediction.
Bioinform.
Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen
1999 B conf
Finding Maximal Pairs with Bounded Gap.
CPM
Gerth Stølting Brodal, Rune B. Lyngsø, Christian N. S. Pedersen, Jens Stoye
1999 B conf
Internal loops in RNA secondary structure prediction.
RECOMB
Rune B. Lyngsø, Michael Zuker, Christian N. S. Pedersen
1999 A conf
Metrics and Similarity Measures for Hidden Markov Models.
ISMB
Rune B. Lyngsø, Christian N. S. Pedersen, Henrik Nielsen
1998 B conf
Comparison of Coding DNA.
CPM
Christian N. S. Pedersen, Rune B. Lyngsø, Jotun Hein