Ruifeng Hu

14 papers Journal 14
YearRankTypeTitle / Venue / Authors
2025 J jnl
Deciphering RNA modification and post-transcriptional regulation with NetRNApan.
Briefings Bioinform.
Haodong Xu, Wankun Deng, Ruifeng Hu, Binfeng Liu, Wenchao Zhang, Lujuan Wang, Lin Qi, Xiaolei Ren, Chao Tu, Zhihong Li, Zhongming Zhao
2024 J jnl
MetaDegron: multimodal feature-integrated protein language model for predicting E3 ligase targeted degrons.
Briefings Bioinform.
Mengqiu Zheng, Shaofeng Lin, Kunqi Chen, Ruifeng Hu, Liming Wang, Zhongming Zhao, Haodong Xu
2023 J jnl
A Framework for Detecting Thyroid Cancer from Ultrasound and Histopathological Images Using Deep Learning, Meta-Heuristics, and MCDM Algorithms.
J. Imaging
Rohit Sharma, Gautam Kumar Mahanti, Ganapati Panda, Adyasha Rath, Sujata Dash, Saurav Mallik, Ruifeng Hu
2023 J jnl
Benchmark of embedding-based methods for accurate and transferable prediction of drug response.
Briefings Bioinform.
Peilin Jia, Ruifeng Hu, Zhongming Zhao
2022 J jnl
WebCSEA: web-based cell-type-specific enrichment analysis of genes.
Nucleic Acids Res.
Yulin Dai, Ruifeng Hu, Andi Liu, Kyung Serk Cho, Astrid Marilyn Manuel, Xiaoyang Li, Xianjun Dong, Peilin Jia, Zhongming Zhao
2021 J jnl
CSEA-DB: an omnibus for human complex trait and cell type associations.
Nucleic Acids Res.
Yulin Dai, Ruifeng Hu, Astrid Marilyn Manuel, Andi Liu, Peilin Jia, Zhongming Zhao
2021 J jnl
DeepFun: a deep learning sequence-based model to decipher non-coding variant effect in a tissue- and cell type-specific manner.
Nucleic Acids Res.
Guangsheng Pei, Ruifeng Hu, Peilin Jia, Zhongming Zhao
2021 J jnl
KinaseMD: kinase mutations and drug response database.
Nucleic Acids Res.
Ruifeng Hu, Hao-Dong Xu, Peilin Jia, Zhongming Zhao
2020 J jnl
6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes.
Bioinform.
Hao-Dong Xu, Ruifeng Hu, Peilin Jia, Zhongming Zhao
2020 J jnl
TSEA-DB: a trait?tissue association map for human complex traits and diseases.
Nucleic Acids Res.
Peilin Jia, Yulin Dai, Ruifeng Hu, Guangsheng Pei, Astrid Marilyn Manuel, Zhongming Zhao
2020 J jnl
VISDB: a manually curated database of viral integration sites in the human genome.
Nucleic Acids Res.
Deyou Tang, Bingrui Li, Tianyi Xu, Ruifeng Hu, Daqiang Tan, Xiaofeng Song, Peilin Jia, Zhongming Zhao
2018 J jnl
ANCO-GeneDB: annotations and comprehensive analysis of candidate genes for alcohol, nicotine, cocaine and opioid dependence.
Database J. Biol. Databases Curation
Ruifeng Hu, Yulin Dai, Peilin Jia, Zhongming Zhao
2016 J jnl
LSCplus: a fast solution for improving long read accuracy by short read alignment.
BMC Bioinform.
Ruifeng Hu, Guibo Sun, Xiaobo Sun
2016 J jnl
lncRNATargets: A platform for lncRNA target prediction based on nucleic acid thermodynamics.
J. Bioinform. Comput. Biol.
Ruifeng Hu, Xiaobo Sun