Ruibo Wu

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2025 J jnl
TeroSeek: An AI-Powered Knowledge Base and Retrieval Generation Platform for Terpenoid Research.
CoRR
Xu Kang, Siqi Jiang, Kangwei Xu, Jiahao Li, Ruibo Wu
2023 J jnl
Developing TeroENZ and TeroMAP modules for the terpenome research platform TeroKit.
Database J. Biol. Databases Curation
Nianhang Chen, Rong Zhang, Tao Zeng, Xuting Zhang, Ruibo Wu
2023 J jnl
QM/MM Modeling Aided Enzyme Engineering in Natural Products Biosynthesis.
J. Chem. Inf. Model.
Fan Zhang, Tao Zeng, Ruibo Wu
2022 J jnl
Bio-inspired chemical space exploration of terpenoids.
Briefings Bioinform.
Tao Zeng, Bernard Andes Hess Jr., Fan Zhang, Ruibo Wu
2021 J jnl
BioNavi-NP: Biosynthesis Navigator for Natural Products.
CoRR
Shuangjia Zheng, Tao Zeng, Chengtao Li, Binghong Chen, Connor W. Coley, Yuedong Yang, Ruibo Wu
2020 J jnl
GM-DockZn: a geometry matching-based docking algorithm for zinc proteins.
Bioinform.
Kai Wang, Nan Lyu, Hongjuan Diao, Shujuan Jin, Tao Zeng, Yaoqi Zhou, Ruibo Wu
2020 J jnl
Residue-Orientation-Dependent Dynamics and Selectivity of Active Pocket in Microbe Class I Terpene Cyclases.
J. Chem. Inf. Model.
Jingyuan Zhuang, Fan Zhang, Jingwei Zhou, Wenbin Deng, Ruibo Wu
2020 J jnl
TeroKit: A Database-Driven Web Server for Terpenome Research.
J. Chem. Inf. Model.
Tao Zeng, Zhihong Liu, Jingyuan Zhuang, Yitao Jiang, Wengan He, Hongjuan Diao, Nan Lv, Yongxing Jian, Danhong Liang, Yufan Qiu, Rong Zhang, Fan Zhang, Xiaowen Tang, Ruibo Wu
2019 J jnl
Exploring Chemical and Biological Space of Terpenoids.
J. Chem. Inf. Model.
Tao Zeng, Zhihong Liu, Huawei Liu, Wengan He, Xiaowen Tang, Liwei Xie, Ruibo Wu
2017 J jnl
Intrinsic Dynamics of the Binding Rail and Its Allosteric Effect in the Class I Histone Deacetylases.
J. Chem. Inf. Model.
Jingwei Zhou, Yue Huang, Chunyan Cheng, Kai Wang, Ruibo Wu
2016 J jnl
Molecular Dynamics Simulations Elucidate Conformational Dynamics Responsible for the Cyclization Reaction in TEAS.
J. Chem. Inf. Model.
Fan Zhang, Nanhao Chen, Ruibo Wu
2015 J jnl
Binding Kinetics versus Affinities in BRD4 Inhibition.
J. Chem. Inf. Model.
Ming Kuang, Jingwei Zhou, Laiyou Wang, Zhihong Liu, Jiao Guo, Ruibo Wu
2015 J jnl
Thiol versus hydroxamate as zinc binding group in HDAC inhibition: An
J. Comput. Chem.
Wenjing Gong, Ruibo Wu, Yingkai Zhang
2014 J jnl
Structure-Function Analysis of the Conserved Tyrosine and Diverse π-Stacking among Class I Histone Deacetylases: A QM (DFT)/MM MD Study.
J. Chem. Inf. Model.
Jingwei Zhou, Hujun Xie, Zhihong Liu, Hai-Bin Luo, Ruibo Wu
2013 J jnl
Molecular Dynamics-Based Virtual Screening: Accelerating the Drug Discovery Process by High-Performance Computing.
J. Chem. Inf. Model.
Hu Ge, Yu Wang, Chanjuan Li, Nanhao Chen, Yufang Xie, Mengyan Xu, Yingyan He, Xinchun Gu, Ruibo Wu, Qiong Gu, Liang Zeng, Jun Xu
2009 J jnl
Molecular dynamics simulations of the detoxification of paraoxon catalyzed by phosphotriesterase.
J. Comput. Chem.
Xin Zhang, Ruibo Wu, Lingchun Song, Yuchun Lin, Menghai Lin, Zexing Cao, Wei Wu, Yirong Mo
2008 J jnl
Effects of electron attachment on C
J. Comput. Chem.
Hujun Xie, Ruibo Wu, Fei Xia, Zexing Cao
2008 J jnl
QM/MM study of catalytic methyl transfer by the
J. Comput. Chem.
Ruibo Wu, Zexing Cao