Ruibang Luo

38 papers A* 1A 1B 1Journal 26Unranked 9
YearRankTypeTitle / Venue / Authors
2025 J jnl
AutoPM3: enhancing variant interpretation via LLM-driven PM3 evidence extraction from scientific literature.
Bioinform.
Shumin Li, Yiding Wang, Chi-Man Liu, Yuanhua Huang, Tak Wah Lam, Ruibang Luo
2025 J jnl
Optimizing long term disease prevention with reinforcement learning: a framework for precision lipid control.
npj Digit. Medicine
Yekai Zhou, Ruibang Luo, Joseph Edgar Blais, Kathryn C. B. Tan, David Tak Wai Lui, Kai Hang Yiu, Francisco Tsz Tsun Lai, Eric Yuk Fai Wan, Ching-Lung Cheung, Ian Chi Kei Wong, Celine Sl Chui
2025 J jnl
Real-time raw signal genomic analysis using fully integrated memristor hardware.
CoRR
Peiyi He, Shengbo Wang, Ruibin Mao, Sebastian Siegel, Giacomo Pedretti, Jim Ignowski, John Paul Strachan, Ruibang Luo, Can Li
2025 J jnl
Real-time raw signal genomic analysis using fully integrated memristor hardware.
Nat. Comput. Sci.
Peiyi He, Shengbo Wang, Ruibin Mao, Mingrui Jiang, Sebastian Siegel, Giacomo Pedretti, Jim Ignowski, John Paul Strachan, Ruibang Luo, Can Li
2025 J jnl
Repun: an accurate small variant representation unification method for multiple sequencing platforms.
Briefings Bioinform.
Zhenxian Zheng, Yingxuan Ren, Lei Chen, Angel On Ki Wong, Shumin Li, Xian Yu, Tak Wah Lam, Ruibang Luo
2024 J jnl
CellContrast: Reconstructing spatial relationships in single-cell RNA sequencing data via deep contrastive learning.
Patterns
Shumin Li, Jiajun Ma, Tianyi Zhao, Yuran Jia, Bo Liu, Ruibang Luo, Yuanhua Huang
2024 A conf
ShiftCAM: A Time-Domain Content Addressable Memory Utilizing Shifted Hamming Distance for Robust Genome Analysis.
ICCAD
Peiyi He, Ruibin Mao, Keyi Shan, Yunwei Tong, Zhicheng Xu, Muyuan Peng, Ruibang Luo, Can Li
2024 J jnl
Unveiling promising drug targets for autism spectrum disorder: insights from genetics, transcriptomics, and proteomics.
Briefings Bioinform.
Rui Jiang, Wentao Huang, Xinqi Qiu, Jianyi Chen, Ruibang Luo, Ruijie Zeng, Shuangshuang Tong, Yanlin Lyu, Panpan Sun, Qizhou Lian, Felix W. Leung, Yufeng Liu, Weihong Sha, Hao Chen
2023 J jnl
Boosting variant-calling performance with multi-platform sequencing data using Clair3-MP.
BMC Bioinform.
Huijing Yu, Zhenxian Zheng, Junhao Su, Tak Wah Lam, Ruibang Luo
2023 — conf
Exploring Pair-Aware Triangular Attention for Biomedical Relation Extraction.
BCB
Lei Chen, Junhao Su, Tak Wah Lam, Ruibang Luo
2023 — conf
Large-scale Dataset and Effective Model for Variant-Disease Associations Extraction.
BCB
Lei Chen, Junhao Su, Zhenxian Zheng, Tak Wah Lam, Ruibang Luo
2022 J jnl
Clair3-trio: high-performance Nanopore long-read variant calling in family trios with trio-to-trio deep neural networks.
Briefings Bioinform.
Junhao Su, Zhenxian Zheng, Syed Shakeel Ahmed, Tak Wah Lam, Ruibang Luo
2022 J jnl
Duet: SNP-assisted structural variant calling and phasing using Oxford nanopore sequencing.
BMC Bioinform.
Yekai Zhou, Amy Wing-Sze Leung, Syed Shakeel Ahmed, Tak Wah Lam, Ruibang Luo
2022 J jnl
Generalized radiograph representation learning via cross-supervision between images and free-text radiology reports.
Nat. Mach. Intell.
Hong-Yu Zhou, Xiaoyu Chen, Yinghao Zhang, Ruibang Luo, Liansheng Wang, Yizhou Yu
2022 J jnl
Symphonizing pileup and full-alignment for deep learning-based long-read variant calling.
Nat. Comput. Sci.
Zhenxian Zheng, Shumin Li, Junhao Su, Amy Wing-Sze Leung, Tak Wah Lam, Ruibang Luo
2021 — conf
BioNumQA-BERT: answering biomedical questions using numerical facts with a deep language representation model.
BCB
Ye Wu, Hing-Fung Ting, Tak Wah Lam, Ruibang Luo
2021 J jnl
Generalized Radiograph Representation Learning via Cross-supervision between Images and Free-text Radiology Reports.
CoRR
Hong-Yu Zhou, Xiaoyu Chen, Yinghao Zhang, Ruibang Luo, Liansheng Wang, Yizhou Yu
2020 — conf
ChromSeg: Two-Stage Framework for Overlapping Chromosome Segmentation and Reconstruction.
BIBM
Xu Cao, Fangzhou Lan, Chi-Man Liu, Tak Wah Lam, Ruibang Luo
2020 J jnl
Exploring the limit of using a deep neural network on pileup data for germline variant calling.
Nat. Mach. Intell.
Ruibang Luo, Chak-Lim Wong, Yat-Sing Wong, Chi Ian Tang, Chi-Man Liu, Chi-Ming Leung, Tak Wah Lam
2020 A* conf
MC-Explorer: Analyzing and Visualizing Motif-Cliques on Large Networks.
ICDE
Boxuan Li, Reynold Cheng, Jiafeng Hu, Yixiang Fang, Min Ou, Ruibang Luo, Kevin Chen-Chuan Chang, Xuemin Lin
2020 — conf
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics.
BIBM
Wui Wang Lui, Amy Wing-Sze Leung, Henry C. M. Leung, Yan Xin, Jade L. L. Teng, Patrick C. Y. Woo, Tak Wah Lam, Ruibang Luo
2020 J jnl
Skyhawk: an artificial neural network-based discriminator for reviewing clinically significant genomic variants.
Int. J. Comput. Biol. Drug Des.
Ruibang Luo, Tak Wah Lam, Michael C. Schatz
2020 — conf
Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long reads.
BCB
Ye Wu, Ruibang Luo, Tak Wah Lam, Hing-Fung Ting, Junwen Wang
2019 B conf
RENET: A Deep Learning Approach for Extracting Gene-Disease Associations from Literature.
RECOMB
Ye Wu, Ruibang Luo, Henry C. M. Leung, Hing-Fung Ting, Tak Wah Lam
2018 J jnl
AC-DIAMOND v1: accelerating large-scale DNA-protein alignment.
Bioinform.
Huijun Mai, Yifan Zhang, Dinghua Li, Henry Chi-Ming Leung, Ruibang Luo, Chi-Kwong Wong, Hing-Fung Ting, Tak Wah Lam
2018 — conf
MegaPath: Low-Similarity Pathogen Detection from Metagenomic NGS Data (Extended Abstract).
ICCABS
Dinghua Li, Henry Chi-Ming Leung, Chi-Kwong Wong, Yifan Zhang, Wai-Chun Law, Yan Xin, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam
2017 J jnl
MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs.
BMC Bioinform.
Dinghua Li, Yukun Huang, Henry C. M. Leung, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam
2016 — conf
AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing.
IWBBIO
Huijun Mai, Dinghua Li, Yifan Zhang, Henry Chi-Ming Leung, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam
2015 J jnl
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct
Bioinform.
Dinghua Li, Chi-Man Liu, Ruibang Luo, Kunihiko Sadakane, Tak Wah Lam
2015 J jnl
MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).
BMC Bioinform.
Ruibang Luo, Jeanno Cheung, Edward Wu, Heng Wang, Sze-Hang Chan, Wai-Chun Law, Guangzhu He, Chang Yu, Chi-Man Liu, Dazong Zhou, Yingrui Li, Ruiqiang Li, Jun Wang, Xiaoqian Zhu, Shaoliang Peng, Tak Wah Lam
2015 J jnl
database.bio: a web application for interpreting human variations.
Bioinform.
Min Ou, Ricky Ma, Jeanno Cheung, Katie Lo, Patrick Yee, Tewei Luo, T. L. Chan, Chun Hang Au, Ava Kwong, Ruibang Luo, Tak Wah Lam
2014 J jnl
FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data.
Bioinform.
Weixin Wang, Panwen Wang, Feng Xu, Ruibang Luo, Maria P. Wong, Tak Wah Lam, Junwen Wang
2014 J jnl
GPU-Accelerated BWT Construction for Large Collection of Short Reads.
CoRR
Chi-Man Liu, Ruibang Luo, Tak Wah Lam
2014 J jnl
MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC).
CoRR
Sze-Hang Chan, Jeanno Cheung, Edward Wu, Heng Wang, Chi-Man Liu, Xiaoqian Zhu, Shaoliang Peng, Ruibang Luo, Tak Wah Lam
2014 J jnl
SOAPdenovo-Trans:
Bioinform.
Yinlong Xie, Gengxiong Wu, Jingbo Tang, Ruibang Luo, Jordan Patterson, Shanlin Liu, Weihua Huang, Guangzhu He, Shengchang Gu, Shengkang Li, Xin Zhou, Tak Wah Lam, Yingrui Li, Xun Xu, Gane Ka-Shu Wong, Jun Wang
2012 J jnl
COPE: an accurate
Bioinform.
Binghang Liu, JianYing Yuan, Siu-Ming Yiu, Zhenyu Li, Yinlong Xie, Yanxiang Chen, Yujian Shi, Hao Zhang, Yingrui Li, Tak Wah Lam, Ruibang Luo
2012 — conf
Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples.
BCB
Ruibang Luo, Chang Yu, Chi-Man Liu, Tak Wah Lam, Thomas K. F. Wong, Siu-Ming Yiu, Ruiqiang Li, Hing-Fung Ting
2012 J jnl
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads.
Bioinform.
Chi-Man Liu, Thomas K. F. Wong, Edward Wu, Ruibang Luo, Siu-Ming Yiu, Yingrui Li, Bingqiang Wang, Chang Yu, Xiaowen Chu, Kaiyong Zhao, Ruiqiang Li, Tak Wah Lam