Rui Oliveira

19 papers C 1Misc 1Journal 16
YearRankTypeTitle / Venue / Authors
2025 J jnl
A Physics-Informed Neural Network (PINN) framework for generic bioreactor modelling.
Comput. Chem. Eng.
Monesh kumar Thirugnanasambandam, José Pinto, Ekaterina Moskovkina, Rafael S. Costa, Rui Oliveira
2025 J jnl
Incorporating first-principles information into hybrid modeling structures: Comparing hybrid semi-parametric models with Physics-Informed Recurrent Neural Networks.
Comput. Chem. Eng.
Peter Jul-Rasmussen, Monesh Kumar, José Pinto, Rui Oliveira, Xiaodong Li, Jakob Kjøbsted Huusom
2023 J jnl
SBML2HYB: a Python interface for SBML compatible hybrid modeling.
Bioinform.
José Pinto, Rafael S. Costa, Leonardo Alexandre, João Ramos, Rui Oliveira
2022 J jnl
A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks.
Comput. Chem. Eng.
José Pinto, Mykaella Mestre, J. Ramos, Rafael S. Costa, Gerald Striedner, Rui Oliveira
2016 J jnl
A principal components method constrained by elementary flux modes: analysis of flux data sets.
BMC Bioinform.
Moritz von Stosch, Cristiana Rodrigues de Azevedo, Mauro Luis, Sebastião Feyo de Azevedo, Rui Oliveira
2015 Misc conf
Iterative learning control of polyhydroxybutyrate production in a sequencing batch reactor.
MMAR
Seyong Jung, Jie Zhang, Rui Oliveira
2014 — ch.
Hybrid Modeling for Systems Biology: Theory and Practice.
Large-Scale Networks in Engineering and Life Sciences
Moritz von Stosch, Nuno Carinhas, Rui Oliveira
2014 J jnl
Hybrid semi-parametric modeling in process systems engineering: Past, present and future.
Comput. Chem. Eng.
Moritz von Stosch, Rui Oliveira, Joana Peres, Sebastião Feyo de Azevedo
2012 J jnl
On the Effect of Thermodynamic Equilibrium on the Assembly Efficiency of Complex Multi-Layered Virus-Like Particles (VLP): the Case of Rotavirus VLP.
PLoS Comput. Biol.
António Roldão, Maria Candida M. Mellado, J. C. Lima, Manuel J. T. Carrondo, Paula M. Alves, Rui Oliveira
2011 J jnl
A novel identification method for hybrid (N)PLS dynamical systems with application to bioprocesses.
Expert Syst. Appl.
Moritz von Stosch, Rui Oliveira, Joana Peres, Sebastião Feyo de Azevedo
2011 J jnl
Cell functional enviromics: Unravelling the function of environmental factors.
BMC Syst. Biol.
Ana P. Teixeira, João M. L. Dias, Nuno Carinhas, Marcos Sousa, José Clemente, António Cunha, Moritz von Stosch, Paula M. Alves, Manuel J. T. Carrondo, Rui Oliveira
2011 J jnl
Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products.
BMC Syst. Biol.
Nuno Carinhas, Vicente Bernal, Ana P. Teixeira, Manuel J. T. Carrondo, Paula M. Alves, Rui Oliveira
2011 J jnl
Projection to latent pathways (PLP): a constrained projection to latent variables (PLS) method for elementary flux modes discrimination.
BMC Syst. Biol.
Ana R. Ferreira, João M. L. Dias, Ana P. Teixeira, Nuno Carinhas, Rui M. C. Portela, Inês A. Isidro, Moritz von Stosch, Rui Oliveira
2010 J jnl
Modelling biochemical networks with intrinsic time delays: a hybrid semi-parametric approach.
BMC Syst. Biol.
Moritz von Stosch, Joana Peres, Sebastião Feyo de Azevedo, Rui Oliveira
2008 J jnl
Metabolic modelling of polyhydroxyalkanoate copolymers production by mixed microbial cultures.
BMC Syst. Biol.
João M. L. Dias, Adrian Oehmen, Luísa S. Serafim, Paulo C. Lemos, Maria A. M. Reis, Rui Oliveira
2008 J jnl
Stochastic simulation of protein expression in the baculovirus/insect cells system.
Comput. Chem. Eng.
António Roldão, Manuel J. T. Carrondo, Paula M. Alves, Rui Oliveira
2007 J jnl
Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control.
BMC Bioinform.
Ana P. Teixeira, Carlos Alves, Paula M. Alves, Manuel J. T. Carrondo, Rui Oliveira
2005 C conf
Hybrid Metabolic Flux Analysis/Artificial Neural Network Modeling of Bioprocesses.
HIS
Ana P. Teixeira, Paula M. Alves, Rui Oliveira, Carlos Alves, Manuel J. T. Carrondo
2004 J jnl
Combining first principles modelling and artificial neural networks: a general framework.
Comput. Chem. Eng.
Rui Oliveira