Rui Chen

11 papers Journal 8Unranked 3
YearRankTypeTitle / Venue / Authors
2025 — conf
Integrating Single Cell RNA Sequencing Data and Protein Embeddings to Infer Cell-Cell Communication in Alzheimer's Disease.
BIBM
Yuting Tan, Yang Li, Rui Chen, Anshul Tiwari, Zhexing Wen, Xue Zhong, Zhijun Yin, Bingshan Li
2025 — conf
Leveraging scHi-C Data for Integrated Single-Cell Omics Analysis.
BIBM
Weixin Liu, Rui Chen, Yang Li, Yuting Tan, Xue Zhong, Bingshan Li, Zhijun Yin
2025 J jnl
Tensor decomposition of multi-dimensional splicing events across multiple tissues to identify splicing-mediated risk genes associated with complex traits.
PLoS Comput. Biol.
Yan Yan, Rui Chen, Hakmook Kang, Yuting Tan, Anshul Tiwari, Siyuan Ma, Zhexing Wen, Xue Zhong, Bingshan Li
2024 — conf
Improving Genetic Perturbation Response Prediction with an Enhanced Biological Knowledge Graph.
BIBM
Yang Li, Rui Chen, Yuting Tan, Xue Zhong, Bingshan Li, Zhijun Yin
2023 J jnl
From multi-omics data to the cancer druggable gene discovery: a novel machine learning-based approach.
Briefings Bioinform.
Hai Yang, Lipeng Gan, Rui Chen, Dongdong Li, Jing Zhang, Zhe Wang
2022 J jnl
A Bayesian framework to integrate multi-level genome-scale data for Autism risk gene prioritization.
BMC Bioinform.
Ying Ji, Rui Chen, Quan Wang, Qiang Wei, Ran Tao, Bingshan Li
2022 J jnl
TVAR: assessing tissue-specific functional effects of non-coding variants with deep learning.
Bioinform.
Hai Yang, Rui Chen, Quan Wang, Qiang Wei, Ying Ji, Xue Zhong, Bingshan Li
2021 J jnl
Subtype-GAN: a deep learning approach for integrative cancer subtyping of multi-omics data.
Bioinform.
Hai Yang, Rui Chen, Dongdong Li, Zhe Wang
2020 J jnl
DRAMS: A tool to detect and re-align mixed-up samples for integrative studies of multi-omics data.
PLoS Comput. Biol.
Yi Jiang, Gina Giase, Kay Grennan, Annie W. Shieh, Yan Xia, Lide Han, Quan Wang, Qiang Wei, Rui Chen, Sihan Liu, Kevin P. White, Chao Chen, Bingshan Li, Chunyu Liu
2019 J jnl
De novo pattern discovery enables robust assessment of functional consequences of non-coding variants.
Bioinform.
Hai Yang, Rui Chen, Quan Wang, Qiang Wei, Ying Ji, Guangze Zheng, Xue Zhong, Nancy J. Cox, Bingshan Li
2015 J jnl
A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis.
Bioinform.
Rui Chen, Qiang Wei, Xiaowei Zhan, Xue Zhong, James S. Sutcliffe, Nancy J. Cox, Edwin H. Cook Jr., Chun Li, Wei Chen, Bingshan Li