Ruheng Wang

14 papers Journal 14
YearRankTypeTitle / Venue / Authors
2026 J jnl
DiffuScope: A diffusion-regularized autoencoder for spatial transcriptomic clustering.
Comput. Biol. Chem.
Hua Shi, Ding Yi, Yang Cui, Ruheng Wang, Yan Li, Chunyan Ao, Ruihua Guo, Weihang Zhang, Tao Peng, Yuying Le, Yaxuan Cui, Leyi Wei
2026 J jnl
Scaling Medical Reasoning Verification via Tool-Integrated Reinforcement Learning.
CoRR
Hang Zhang, Ruheng Wang, Yuelyu Ji, Min Gu Kwak, Xizhi Wu, Chenyu Li, Li Zhang, Wenqi Shi, Yifan Peng, Yanshan Wang
2025 J jnl
A Multi-Objective Comprehensive Framework for Predicting Protein-Peptide Interactions and Binding Residues.
IEEE J. Biomed. Health Informatics
Ruheng Wang, Xuetong Yang, Chao Pang, Leyi Wei
2025 J jnl
Multiview Deep Learning-Based Molecule Design and Structural Optimization Accelerates Inhibitor Discover.
IEEE Trans. Neural Networks Learn. Syst.
Chao Pang, Yu Wang, Yi Jiang, Ruheng Wang, Xiaojun Yao, Quan Zou, Xiangxiang Zeng, Ran Su, Leyi Wei
2025 J jnl
PepThink-R1: LLM for Interpretable Cyclic Peptide Optimization with CoT SFT and Reinforcement Learning.
CoRR
Ruheng Wang, Hang Zhang, Trieu Nguyen, Shasha Feng, Hao-Wei Pang, Xiang Yu, Li Xiao, Peter Zhiping Zhang
2024 J jnl
An interpretable deep learning model predicts RNA-small molecule binding sites.
Future Gener. Comput. Syst.
Wen-Yu Xi, Ruheng Wang, Li Wang, Xiucai Ye, Mingyang Liu, Tetsuya Sakurai
2024 J jnl
AttenSyn: An Attention-Based Deep Graph Neural Network for Anticancer Synergistic Drug Combination Prediction.
J. Chem. Inf. Model.
Tianshuo Wang, Ruheng Wang, Leyi Wei
2024 J jnl
CACPP: A Contrastive Learning-Based Siamese Network to Identify Anticancer Peptides Based on Sequence Only.
J. Chem. Inf. Model.
Xuetong Yang, Junru Jin, Ruheng Wang, Zhongshen Li, Yu Wang, Leyi Wei
2024 J jnl
MucLiPred: Multi-Level Contrastive Learning for Predicting Nucleic Acid Binding Residues of Proteins.
J. Chem. Inf. Model.
Jiashuo Zhang, Ruheng Wang, Leyi Wei
2024 J jnl
Multi-CGAN: Deep Generative Model-Based Multiproperty Antimicrobial Peptide Design.
J. Chem. Inf. Model.
Haoqing Yu, Ruheng Wang, Jianbo Qiao, Leyi Wei
2024 J jnl
NanoCon: contrastive learning-based deep hybrid network for nanopore methylation detection.
Bioinform.
Chenglin Yin, Ruheng Wang, Jianbo Qiao, Hua Shi, Hongliang Duan, Xinbo Jiang, Saisai Teng, Leyi Wei
2023 J jnl
ConPep: Prediction of peptide contact maps with pre-trained biological language model and multi-view feature extracting strategy.
Comput. Biol. Medicine
Qingxin Wei, Ruheng Wang, Yi Jiang, Leyi Wei, Yu Sun, Jie Geng, Ran Su
2022 J jnl
Multi-view deep learning based molecule design and structural optimization accelerates the SARS-CoV-2 inhibitor discovery.
CoRR
Chao Pang, Yu Wang, Yi Jiang, Ruheng Wang, Ran Su, Leyi Wei
2022 J jnl
Predicting protein-peptide binding residues via interpretable deep learning.
Bioinform.
Ruheng Wang, Junru Jin, Quan Zou, Kenta Nakai, Leyi Wei