Ross C. Hardison

25 papers B 1C 1Journal 19Unranked 4
YearRankTypeTitle / Venue / Authors
2023 J jnl
Snapshot: a package for clustering and visualizing epigenetic history during cell differentiation.
BMC Bioinform.
Guanjue Xiang, Belinda Giardine, Lin An, Chen Sun, Cheryl A. Keller, Elisabeth F. Heuston, Stacie M. Anderson, Martha Kirby, David M. Bodine, Yu Zhang, Ross C. Hardison
2021 J jnl
Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations.
Nucleic Acids Res.
Belinda Giardine, Philippe Joly, Serge Pissard, Henri Wajcman, David H. K. Chui, Ross C. Hardison, George P. Patrinos
2021 J jnl
S3V2-IDEAS: a package for normalizing, denoising and integrating epigenomic datasets across different cell types.
Bioinform.
Guanjue Xiang, Belinda Giardine, Shaun Mahony, Yu Zhang, Ross C. Hardison
2020 J jnl
The changing mouse embryo transcriptome at whole tissue and single-cell resolution.
Nat.
Peng He, Brian A. Williams, Diane Trout, Georgi K. Marinov, Henry Amrhein, Libera Berghella, Say-Tar Goh, Ingrid Plajzer-Frick, Veena Afzal, Len A. Pennacchio, Diane E. Dickel, Axel Visel, Bing Ren, Ross C. Hardison, Yu Zhang, Barbara J. Wold
2019 C conf
Systems Biology in Heterogenous Tissues: Integrating Multiple *Omics Datasets to Understand Hematopoietic Differentiation.
BIBE
Jens Lichtenberg, Guanjue Xiang, Elisabeth F. Heuston, Belinda Giardine, Cheryl A. Keller, Ross C. Hardison, David M. Bodine, Yu Zhang
2016 J jnl
SBR-Blood: systems biology repository for hematopoietic cells.
Nucleic Acids Res.
Jens Lichtenberg, Elisabeth F. Heuston, Tejaswini Mishra, Cheryl A. Keller, Ross C. Hardison, David M. Bodine
2014 J jnl
MRHMMs: Multivariate Regression Hidden Markov Models and the variantS.
Bioinform.
Yeonok Lee, Debashis Ghosh, Ross C. Hardison, Yu Zhang
2014 J jnl
Topologically associating domains are stable units of replication-timing regulation Open.
Nat.
Benjamin D. Pope, Tyrone Ryba, Vishnu Dileep, Feng Yue, Wei-Sheng Wu, Olgert Denas, Daniel L. Vera, Yanli Wang, R. Scott Hansen, Theresa K. Canfield, Robert E. Thurman, Yong Cheng, Günhan Gülsoy, Jonathan H. Dennis, Michael P. Snyder, John A. Stamatoyannopoulos, James Taylor, Ross C. Hardison, Tamer Kahveci, Bing Ren, David M. Gilbert
2014 J jnl
Updates of the HbVar database of human hemoglobin variants and thalassemia mutations.
Nucleic Acids Res.
Belinda Giardine, Joseph Borg, Emmanouil Viennas, Cristiana Pavlidis, Kamran Moradkhani, Philippe Joly, Marina Bartsakoulia, Cathy Riemer, Webb Miller, Giannis Tzimas, Henri Wajcman, Ross C. Hardison, George P. Patrinos
2010 J jnl
An Effective Method for Detecting Gene Conversion Events in Whole Genomes.
J. Comput. Biol.
Chih-Hao Hsu, Yu Zhang, Ross C. Hardison, Eric D. Green, Webb Miller
2009 — conf
Aligning Two Genomic Sequences That Contain Duplications.
RECOMB-CG
Minmei Hou, Cathy Riemer, Piotr Berman, Ross C. Hardison, Webb Miller
2009 — conf
Whole-Genome Analysis of Gene Conversion Events.
RECOMB-CG
Chih-Hao Hsu, Yu Zhang, Ross C. Hardison, Webb Miller
2008 — conf
Identifying Conserved Discriminative Motifs.
PRIB
Jyotsna Kasturi, Raj Acharya, Ross C. Hardison
2008 J jnl
ORegAnno: an open-access community-driven resource for regulatory annotation.
Nucleic Acids Res.
Obi L. Griffith, Stephen B. Montgomery, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts, Shaun Mahony, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith, Steven M. Gallo, Belinda Giardine, Bart Hooghe, Peter Van Loo, Enrique Blanco, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman, Ross C. Hardison, Casey M. Bergman, Steven J. M. Jones
2005 J jnl
Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results.
Nucleic Acids Res.
Laura Elnitski, Belinda Giardine, Prachi Shah, Yi Zhang, Cathy Riemer, Matthew T. Weirauch, Richard Burhans, Webb Miller, Ross C. Hardison
2004 J jnl
Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies.
Nucleic Acids Res.
George P. Patrinos, Belinda Giardine, Cathy Riemer, Webb Miller, David H. K. Chui, Nicholas P. Anagnou, Henri Wajcman, Ross C. Hardison
2003 J jnl
MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences.
Nucleic Acids Res.
Scott Schwartz, Laura Elnitski, Mei Li, Matthew T. Weirauch, Cathy Riemer, Arian Smit, Eric D. Green, Ross C. Hardison, Webb Miller
1997 B conf
A Linear-Time Algorithm for the 1-Mismatch Problem.
WADS
Nikola Stojanovic, Piotr Berman, Deborah Gumucio, Ross C. Hardison, Webb Miller
1995 — conf
A database for globin gene expression data.
HICSS (5)
Webb Miller, Ahmed Elsherbini, Jamie Peck, Cathy Riemer, Scott Schwartz, Nikola Stojanovic, Ross C. Hardison
1994 J jnl
Chaining Multiple-Alignment Blocks.
J. Comput. Biol.
Zheng Zhang, Balaji Raghavachari, Ross C. Hardison, Webb Miller
1994 J jnl
Constructing Aligned Sequence Blocks.
J. Comput. Biol.
Webb Miller, Mark Boguski, Balaji Raghavachari, Zheng Zhang, Ross C. Hardison
1994 J jnl
Recent Developments in Linear-Space Alignment Methods: A Survey.
J. Comput. Biol.
Kun-Mao Chao, Ross C. Hardison, Webb Miller
1993 J jnl
Locating well-conserved regions within a pairwise alignment.
Comput. Appl. Biosci.
Kun-Mao Chao, Ross C. Hardison, Webb Miller
1992 J jnl
Parallelization of a local similarity algorithm.
Comput. Appl. Biosci.
Xiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison
1990 J jnl
A space-efficient algorithm for local similarities.
Comput. Appl. Biosci.
Xiaoqiu Huang, Ross C. Hardison, Webb Miller