Ronny Lorenz

28 papers B 2Journal 14Unranked 8
YearRankTypeTitle / Venue / Authors
2025 — conf
Integrating High-Throughput RNA-RNA Interaction Data Into RNA Secondary Structure Prediction.
ISBRA (2)
Denis Skibinski, Thomas Spicher, Leonhard Sidl, Paulína Holotová, Yingjie Pan, Maximilian Faissner, Cristian A. Velandia-Huerto, Ronny Lorenz, Maria Waldl, Hua-Ting Yao, Peter F. Stadler
2024 J jnl
Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction.
J. Comput. Biol.
Sarah von Löhneysen, Thomas Spicher, Yuliia Varenyk, Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler
2024 — conf
Squares in Cycles: Prediction of G-Quadruplexes in Circular RNA Secondary Stuctures.
BSB
Ronny Lorenz, Peter F. Stadler
2023 — ed.
Biomedical Engineering Systems and Technologies - 15th International Joint Conference, BIOSTEC 2022, Virtual Event, February 9-11, 2022, Revised Selected Papers
BIOSTEC (Selected Papers)
Ana Cecília Roque, Denis Gracanin, Ronny Lorenz, Athanasios Tsanas, Nathalie Bier, Ana Fred, Hugo Gamboa
2023 J jnl
Local RNA folding revisited.
J. Bioinform. Comput. Biol.
Maria Waldl, Thomas Spicher, Ronny Lorenz, Irene K. Beckmann, Ivo L. Hofacker, Sarah von Löhneysen, Peter F. Stadler
2023 J jnl
Modified RNAs and predictions with the ViennaRNA Package.
Bioinform.
Yuliia Varenyk, Thomas Spicher, Ivo L. Hofacker, Ronny Lorenz
2023 J jnl
Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package.
Algorithms Mol. Biol.
Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler
2023 — conf
Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction.
ISBRA
Sarah von Löhneysen, Thomas Spicher, Yuliia Varenyk, Hua-Ting Yao, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler
2022 — ed.
Biomedical Engineering Systems and Technologies - 14th International Joint Conference, BIOSTEC 2021, Virtual Event, February 11-13, 2021, Revised Selected Papers
BIOSTEC (Selected Papers)
Claudine Géhin, Bruno Wacogne, Alexandre Douplik, Ronny Lorenz, Bethany K. Bracken, Catia Pesquita, Ana Fred, Hugo Gamboa
2022 J jnl
Caveats to Deep Learning Approaches to RNA Secondary Structure Prediction.
Frontiers Bioinform.
Christoph Flamm, Julia Wielach, Michael T. Wolfinger, Stefan Badelt, Ronny Lorenz, Ivo L. Hofacker
2022 — ed.
Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2022, Volume 3: BIOINFORMATICS, Online Streaming, February 9-11, 2022.
BIOINFORMATICS
Ronny Lorenz, Ana Fred, Hugo Gamboa
2021 — ed.
Proceedings of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2021, Volume 3: BIOINFORMATICS, Online Streaming, February 11-13, 2021.
BIOINFORMATICS
Ronny Lorenz, Ana Fred, Hugo Gamboa
2021 J jnl
RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes.
Bioinform.
Gregor Entzian, Ivo L. Hofacker, Yann Ponty, Ronny Lorenz, Andrea Tanzer
2020 — conf
Efficient Algorithms for Co-folding of Multiple RNAs.
BIOSTEC (Selected Papers)
Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler
2020 — conf
Efficient Computation of Base-pairing Probabilities in Multi-strand RNA Folding.
BIOINFORMATICS
Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler
2019 B conf
Evolving AVX512 Parallel C Code Using GP.
EuroGP
William B. Langdon, Ronny Lorenz
2018 B conf
Evolving Better RNAfold Structure Prediction.
EuroGP
William B. Langdon, Justyna Petke, Ronny Lorenz
2017 — conf
Improving SSE parallel code with grow and graft genetic programming.
GECCO (Companion)
William B. Langdon, Ronny Lorenz
2016 J jnl
RNA folding with hard and soft constraints.
Algorithms Mol. Biol.
Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler
2016 J jnl
SHAPE directed RNA folding.
Bioinform.
Ronny Lorenz, Dominik Luntzer, Ivo L. Hofacker, Peter F. Stadler, Michael T. Wolfinger
2015 J jnl
Model-Free RNA Sequence and Structure Alignment Informed by SHAPE Probing Reveals a Conserved Alternate Secondary Structure for 16S rRNA.
PLoS Comput. Biol.
Christopher A. Lavender, Ronny Lorenz, Ge Zhang, Rita Tamayo, Ivo L. Hofacker, Kevin M. Weeks
2014 J jnl
TSSAR: TSS annotation regime for dRNA-seq data.
BMC Bioinform.
Fabian Amman, Michael T. Wolfinger, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler, Sven Findeiß
2013 J jnl
2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ronny Lorenz, Stephan H. Bernhart, Jing Qin, Christian Höner zu Siederdissen, Andrea Tanzer, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler
2012 J jnl
Folding RNA/DNA hybrid duplexes.
Bioinform.
Ronny Lorenz, Ivo L. Hofacker, Stephan H. Bernhart
2012 — conf
RNA Folding Algorithms with G-Quadruplexes.
BSB
Ronny Lorenz, Stephan H. Bernhart, Fabian Externbrink, Jing Qin, Christian Höner zu Siederdissen, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler
2011 J jnl
ViennaRNA Package 2.0.
Algorithms Mol. Biol.
Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker
2009 — conf
2D Projections of RNA Folding Landscapes.
GCB
Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker
2008 J jnl
The Vienna RNA Websuite.
Nucleic Acids Res.
Andreas R. Gruber, Ronny Lorenz, Stephan H. Bernhart, Richard Neuböck, Ivo L. Hofacker