Rongling Wu

58 papers Misc 1Journal 54Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
scMFF: a machine learning framework with multiple feature fusion strategies for cell type identification.
BMC Bioinform.
Nan Sun, Yu Wang, Xiang Shi, Dengcheng Yang, Rongling Wu, Stephen S.-T. Yau
2024 J jnl
Estimating unknown parameters in differential equations with a reinforcement learning based PSO method.
CoRR
Wenkui Sun, Xiaoya Fan, Lijuan Jia, Tinyi Chu, Shing-Tung Yau, Rongling Wu, Zhong Wang
2022 J jnl
A statistical framework for recovering pseudo-dynamic networks from static data.
Bioinform.
Chixiang Chen, Biyi Shen, Tianzhou Ma, Ming Wang, Rongling Wu
2020 J jnl
HiGwas: how to compute longitudinal GWAS data in population designs.
Bioinform.
Zhong Wang, Nating Wang, Zilu Wang, Libo Jiang, Yaqun Wang, Jiahan Li, Rongling Wu, Janet Kelso
2020 J jnl
Prioritizing genetic variants in GWAS with lasso using permutation-assisted tuning.
Bioinform.
Songshan Yang, Jiawei Wen, Scott T. Eckert, Yaqun Wang, Dajiang J. Liu, Rongling Wu, Runze Li, Xiang Zhan
2018 J jnl
How trees allocate carbon for optimal growth: insight from a game-theoretic model.
Briefings Bioinform.
Liyong Fu, Lidan Sun, Han Hao, Libo Jiang, Sheng Zhu, Meixia Ye, Shouzheng Tang, Minren Huang, Rongling Wu
2018 J jnl
HpQTL: a geometric morphometric platform to compute the genetic architecture of heterophylly.
Briefings Bioinform.
Lidan Sun, Jing Wang, Xuli Zhu, Libo Jiang, Kirk Gosik, Mengmeng Sang, Fengsuo Sun, Tangren Cheng, Qixiang Zhang, Rongling Wu
2018 J jnl
Mapping morphological shape as a high-dimensional functional curve.
Briefings Bioinform.
Guifang Fu, Mian Huang, Wenhao Bo, Han Hao, Rongling Wu
2018 J jnl
Methodological implementation of mixed linear models in multi-locus genome-wide association studies.
Briefings Bioinform.
Yang-Jun Wen, Hanwen Zhang, Yuan-Li Ni, Bo Huang, Jin Zhang, Jian-Ying Feng, Shibo Wang, Jim M. Dunwell, Yuan-Ming Zhang, Rongling Wu
2018 J jnl
The genetic architecture of heterochrony as a quantitative trait: lessons from a computational model.
Briefings Bioinform.
Lidan Sun, Mengmeng Sang, Chenfei Zheng, Dongyang Wang, Hexin Shi, Kaiyue Liu, Yanfang Guo, Tangren Cheng, Qixiang Zhang, Rongling Wu
2017 J jnl
A computing platform to map ecological metabolism by integrating functional mapping and the metabolic theory of ecology.
Briefings Bioinform.
Qin Yan, Xuli Zhu, Libo Jiang, Meixia Ye, Lidan Sun, John S. Terblanche, Rongling Wu
2017 J jnl
A high-dimensional linkage analysis model for characterizing crossover interference.
Briefings Bioinform.
Jing Wang, Lidan Sun, Libo Jiang, Mengmeng Sang, Meixia Ye, Tangran Cheng, Qixiang Zhang, Rongling Wu
2017 J jnl
AlloMap6: an R package for genetic linkage analysis in allohexaploids.
Briefings Bioinform.
Xuli Zhu, Huan Li, Meixia Ye, Libo Jiang, Mengmeng Sang, Rongling Wu
2017 J jnl
Evo-Devo-EpiR: a genome-wide search platform for epistatic control on the evolution of development.
Briefings Bioinform.
Libo Jiang, Miaomiao Zhang, Mengmeng Sang, Meixia Ye, Rongling Wu
2017 J jnl
Methodological implementation of mixed linear models in multi-locus genome-wide association studies.
Briefings Bioinform.
Yang-Jun Wen, Hanwen Zhang, Yuan-Li Ni, Bo Huang, Jin Zhang, Jian-Ying Feng, Shibo Wang, Jim M. Dunwell, Yuan-Ming Zhang, Rongling Wu
2017 J jnl
iFORM/eQTL: an ultrahigh-dimensional platform for inferring the global genetic architecture of gene transcripts.
Briefings Bioinform.
Kirk Gosik, Lan Kong, Vernon M. Chinchilli, Rongling Wu
2015 J jnl
2HiGWAS: a unifying high-dimensional platform to infer the global genetic architecture of trait development.
Briefings Bioinform.
Libo Jiang, Jingyuan Liu, Xuli Zhu, Meixia Ye, Lidan Sun, Xavier Lacaze, Rongling Wu
2015 J jnl
A QTL model to map the common genetic basis for correlative phenotypic plasticity.
Briefings Bioinform.
Tao Zhou, Yafei Lyu, Fang Xu, Wenhao Bo, Yi Zhai, Jian Zhang, Xiaoming Pang, Bingsong Zheng, Rongling Wu
2015 J jnl
A multi-Poisson dynamic mixture model to cluster developmental patterns of gene expression by RNA-seq.
Briefings Bioinform.
Meixia Ye, Zhong Wang, Yaqun Wang, Rongling Wu
2015 J jnl
Allotetraploid and autotetraploid models of linkage analysis.
Briefings Bioinform.
Fang Xu, Chunfa Tong, Yafei Lyu, Wenhao Bo, Xiaoming Pang, Rongling Wu
2015 J jnl
An open-pollinated design for mapping imprinting genes in natural populations.
Briefings Bioinform.
Lidan Sun, Xuli Zhu, Wenhao Bo, Fang Xu, Tangren Cheng, Qixiang Zhang, Rongling Wu
2015 J jnl
Functional mapping of seasonal transition in perennial plants.
Briefings Bioinform.
Meixia Ye, Libo Jiang, Ke Mao, Yaqun Wang, Zhong Wang, Rongling Wu
2014 J jnl
A bi-Poisson model for clustering gene expression profiles by RNA-seq.
Briefings Bioinform.
Ningtao Wang, Yaqun Wang, Han Hao, Luojun Wang, Zhong Wang, Jianxin Wang, Rongling Wu
2014 J jnl
A case-control design for testing and estimating epigenetic effects on complex diseases.
Briefings Bioinform.
Yihan Sui, Weimiao Wu, Zhong Wang, Jianxin Wang, Zuoheng Wang, Rongling Wu
2014 J jnl
A model for family-based case-control studies of genetic imprinting and epistasis.
Briefings Bioinform.
Xin Li, Yihan Sui, Tian Liu, Jianxin Wang, Yongci Li, Zhenwu Lin, John Hegarty, Walter A. Koltun, Zuoheng Wang, Rongling Wu
2014 J jnl
A model-free approach for detecting interactions in genetic association studies.
Briefings Bioinform.
Jiahan Li, Jun Dan, Chunlei Li, Rongling Wu
2014 J jnl
A statistical design for testing apomictic diversification through linkage analysis.
Briefings Bioinform.
Yanru Zeng, Wei Hou, Shuang Song, Sisi Feng, Lin Shen, Guohua Xia, Rongling Wu
2014 J jnl
A statistical model for QTL mapping in polysomic autotetraploids underlying double reduction.
Briefings Bioinform.
Fang Xu, Yafei Lyu, Chunfa Tong, Weimiao Wu, Xuli Zhu, Danni Yin, Qin Yan, Jian Zhang, Xiaoming Pang, Christian M. Tobias, Rongling Wu
2014 J jnl
An allometric model for mapping seed development in plants.
Briefings Bioinform.
Zhongwen Huang, Chunfa Tong, Wenhao Bo, Xiaoming Pang, Zhong Wang, Jichen Xu, Junyi Gai, Rongling Wu
2014 — conf
PFGD: A systematic functional genomics resource for Poplar.
BIBM
Jingna Si, Jin Cheng, Rongling Wu
2014 J jnl
Shape mapping: genetic mapping meets geometric morphometrics.
Briefings Bioinform.
Wenhao Bo, Zhong Wang, Fang Xu, Guifang Fu, Yihan Sui, Weimiao Wu, Xuli Zhu, Danni Yin, Qin Yan, Rongling Wu
2014 J jnl
Structural mapping: how to study the genetic architecture of a phenotypic trait through its formation mechanism.
Briefings Bioinform.
Chunfa Tong, Lianying Shen, Yafei Lv, Zhong Wang, Xiaoling Wang, Sisi Feng, Xin Li, Yihan Sui, Xiaoming Pang, Rongling Wu
2014 J jnl
Systems mapping: how to map genes for biomass allocation toward an ideotype.
Briefings Bioinform.
Wenhao Bo, Guifang Fu, Zhong Wang, Fang Xu, Yong Shen, Jichen Xu, Zhongwen Huang, Junyi Gai, C. Eduardo Vallejos, Rongling Wu
2014 J jnl
Towards a comprehensive picture of the genetic landscape of complex traits.
Briefings Bioinform.
Zhong Wang, Yaqun Wang, Ningtao Wang, Jianxin Wang, Zuoheng Wang, C. Eduardo Vallejos, Rongling Wu
2013 J jnl
A dynamic framework for quantifying the genetic architecture of phenotypic plasticity.
Briefings Bioinform.
Zhong Wang, Xiaoming Pang, Yafei Lv, Fang Xu, Tao Zhou, Xin Li, Sisi Feng, Jiahan Li, Zhikang Li, Rongling Wu
2013 J jnl
A multivalent three-point linkage analysis model of autotetraploids.
Briefings Bioinform.
Yafei Lv, Xiaoxia Yang, Chunfa Tong, Xin Li, Sisi Feng, Zhong Wang, Xiaoming Pang, Yaqun Wang, Ningtao Wang, Christian M. Tobias, Rongling Wu
2013 J jnl
A quantitative model of transcriptional differentiation driving host-pathogen interactions.
Briefings Bioinform.
Sheng Zhu, Zhong Wang, Jianxin Wang, Yaqun Wang, Ningtao Wang, Zuoheng Wang, Meng Xu, Xiaohua Su, Mingxiu Wang, Shougong Zhang, Minren Huang, Rongling Wu
2013 J jnl
A statistical procedure to map high-order epistasis for complex traits.
Briefings Bioinform.
Xiaoming Pang, Zhong Wang, John S. Yap, Jianxin Wang, Junjia Zhu, Wenhao Bo, Yafei Lv, Fang Xu, Tao Zhou, Shaofeng Peng, Dengfeng Shen, Rongling Wu
2013 J jnl
A unifying framework for bivalent multilocus linkage analysis of allotetraploids.
Briefings Bioinform.
Xiaoxia Yang, Yafei Lv, Xiaoming Pang, Chunfa Tong, Zhong Wang, Xin Li, Sisi Feng, Christian M. Tobias, Rongling Wu
2012 J jnl
A computational framework for the inheritance pattern of genomic imprinting for complex traits.
Briefings Bioinform.
Chenguang Wang, Zhong Wang, Daniel R. Prows, Rongling Wu
2012 J jnl
A quantitative genetic and epigenetic model of complex traits.
BMC Bioinform.
Zhong Wang, Zuoheng Wang, Jianxin Wang, Yihan Sui, Jian Zhang, Duanping Liao, Rongling Wu
2012 J jnl
Functional mapping of ontogeny in flowering plants.
Briefings Bioinform.
Xiyang Zhao, Chunfa Tong, Xiaoming Pang, Zhong Wang, Yunqian Guo, Fang Du, Rongling Wu
2012 J jnl
How to cluster gene expression dynamics in response to environmental signals.
Briefings Bioinform.
Yakun Wang, Meng Xu, Zhong Wang, Ming Tao, Junjia Zhu, Li Wang, Runze Li, Scott A. Berceli, Rongling Wu
2011 J jnl
3FunMap: full-sib family functional mapping of dynamic traits.
Bioinform.
Chunfa Tong, Zhong Wang, Bo Zhang, Jisen Shi, Rongling Wu
2011 J jnl
Systems mapping: how to improve the genetic mapping of complex traits through design principles of biological systems.
BMC Syst. Biol.
Rongling Wu, Jiguo Cao, Zhongwen Huang, Zhong Wang, Junyi Gai, C. Eduardo Vallejos
2011 J jnl
The Bayesian lasso for genome-wide association studies.
Bioinform.
Jiahan Li, Kiranmoy Das, Guifang Fu, Runze Li, Rongling Wu
2010 J jnl
Wavelet-Based Functional Clustering for Patterns of High-Dimensional Dynamic Gene Expression.
J. Comput. Biol.
Bong-Rae Kim, Timothy McMurry, Wei Zhao, Rongling Wu, Arthur Berg
2009 J jnl
A Bayesian Algorithm for Functional Mapping of Dynamic Complex Traits.
Algorithms
Tian Liu, Rongling Wu
2009 J jnl
Modeling genetic imprinting effects of DNA sequences with multilocus polymorphism data.
Algorithms Mol. Biol.
Sheron Wen, Chenguang Wang, Arthur Berg, Yao Li, Myron M. Chang, Roger B. Fillingim, Margaret R. Wallace, Roland Staud, Lee Kaplan, Rongling Wu
2008 — conf
Integration of Functional Mapping and Delay Differential Equations to Map the Genes that Regulate Circadian Rhythms.
BCBGC
Yunmei Chen, Guifang Fu, Rongling Wu
2007 J jnl
Modeling sequence-sequence interactions for drug response.
Bioinform.
Min Lin, Hongying Li, Wei Hou, Julie A. Johnson, Rongling Wu
2007 — conf
Semiparametric functional mapping of quantitative trait loci governing long-term HIV dynamics.
ISMB/ECCB (Supplement of Bioinformatics)
Song Wu, Jie Yang, Rongling Wu
2006 Misc conf
A Bivariate Functional Mapping Model for Identifying Haplotypes that Control Drug Response for Systolic and Diastolic Blood Pressures.
Pacific Symposium on Biocomputing
Min Lin, Rongling Wu, Julie A. Johnson
2006 J jnl
A joint model for nonparametric functional mapping of longitudinal trajectory and time-to-event.
BMC Bioinform.
Min Lin, Rongling Wu
2005 J jnl
A non-stationary model for functional mapping of complex traits.
Bioinform.
Wei Zhao, Ying Q. Chen, George Casella, James M. Cheverud, Rongling Wu
2005 J jnl
Mapping genome-genome epistasis: a high-dimensional model.
Bioinform.
Yuehua Cui, Rongling Wu
2004 J jnl
A Mixed Polyploid Model for Linkage Analysis in Outcrossing Tetraploids Using a Pseudo-Test Backcross Design.
J. Comput. Biol.
Rongling Wu, Chang-Xing Ma, George Casella
2004 J jnl
FunMap: functional mapping of complex traits.
Bioinform.
Chang-Xing Ma, Rongling Wu, George Casella