Rong Chen

25 papers Misc 11Journal 13Unranked 1
YearRankTypeTitle / Venue / Authors
2021 — conf
Applying Bayesian hyperparameter optimization towards accurate and efficient topic modeling in clinical notes.
ICHI
Minghao Li, Kyeryoung Lee, Zongzhi Liu, Meng Ma, Qi Pan, Rong Chen, Eric E. Schadt, Xiaoyan Wang
2021 Misc conf
The Real-World Trend Analysis of Cancer Drugs Empowered by Natural Language Processing.
AMIA
Meng Ma, Kyeryoung Lee, Yun Mai, Chris Gilman, Zongzhi Liu, Mingwei Zhang, Minghao Li, Arielle Redfern, Tommy Mullaney, Tony Prentice, Paul McDonagh, Qi Pan, William Oh, Rong Chen, Eric E. Schadt, Xiaoyan Wang
2020 Misc conf
DxTree: a visual analytics tool for hierarchical representation of disease cohort counts for clinical trials.
AMIA
Mingwei Zhang, Zongzhi Liu, Meng Ma, Kyeryoung Lee, Yun Mai, Scott Jones, Chris Gilman, Ying Ru, Matthew Deitz, Yunrou Gong, Xiang Zhou, Krish Ghosh, Rong Chen, Eric E. Schadt, Xiaoyan Wang
2018 Misc conf
Automated disease cohort selection using word embeddings from Electronic Health Records.
PSB
Benjamin S. Glicksberg, Riccardo Miotto, Kipp W. Johnson, Khader Shameer, Li Li, Rong Chen, Joel T. Dudley
2018 Misc conf
Loss-of-function of neuroplasticity-related genes confers risk for human neurodevelopmental disorders.
PSB
Milo R. Smith, Benjamin S. Glicksberg, Li Li, Rong Chen, Hirofumi Morishita, Joel T. Dudley
2018 J jnl
Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning.
Briefings Bioinform.
Khader Shameer, Benjamin S. Glicksberg, Rachel Hodos, Kipp W. Johnson, Marcus A. Badgeley, Ben Readhead, Max S. Tomlinson, Timothy O'Connor, Riccardo Miotto, Brian A. Kidd, Rong Chen, Avi Ma'ayan, Joel T. Dudley
2017 Misc conf
Identify Cancer Driver Genes Through Shared Mendelian Disease Pathogenic Variants and Cancer Somatic Mutations.
PSB
Meng Ma, Changchang Wang, Benjamin S. Glicksberg, Eric E. Schadt, Shuyu Dan Li, Rong Chen
2016 J jnl
Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks.
Bioinform.
Benjamin S. Glicksberg, Li Li, Marcus A. Badgeley, Khader Shameer, Roman Kosoy, Noam D. Beckmann, Nam Pho, Jörg Hakenberg, Meng Ma, Kristin L. Ayers, Gabriel E. Hoffman, Shuyu Dan Li, Eric E. Schadt, Chirag J. Patel, Rong Chen, Joel T. Dudley
2016 J jnl
DIVAS: a centralized genetic variant repository representing 150 000 individuals from multiple disease cohorts.
Bioinform.
Wei-Yi Cheng, Jörg Hakenberg, Shuyu Dan Li, Rong Chen
2016 J jnl
Integrating 400 million variants from 80, 000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts.
BMC Bioinform.
Jörg Hakenberg, Wei-Yi Cheng, Philippe Thomas, Ying-Chih Wang, Andrew V. Uzilov, Rong Chen
2015 Misc conf
An Integrative Pipeline for Multi-Modal Discovery of Disease Relationships.
Pacific Symposium on Biocomputing
Benjamin S. Glicksberg, Li Li, Wei-Yi Cheng, Khader Shameer, Jörg Hakenberg, Rafael Castellanos, Meng Ma, Lisong Shi, Hardik Shah, Joel T. Dudley, Rong Chen
2013 Misc conf
Systematic Identification of Risk Factors for Alzheimer's Disease Through Shared Genetic Architecture and Electronic Medical Records.
Pacific Symposium on Biocomputing
Li Li, David Ruau, Rong Chen, Susan C. Weber, Atul J. Butte
2012 J jnl
Clinical utility of sequence-based genotype compared with that derivable from genotyping arrays.
J. Am. Medical Informatics Assoc.
Alexander A. Morgan, Rong Chen, Atul J. Butte
2012 J jnl
Data-driven integration of epidemiological and toxicological data to select candidate interacting genes and environmental factors in association with disease.
Bioinform.
Chirag J. Patel, Rong Chen, Atul J. Butte
2012 J jnl
Integrative Approach to Pain Genetics Identifies Pain Sensitivity Loci across Diseases.
PLoS Comput. Biol.
David Ruau, Joel Dudley, Rong Chen, Nicholas G. Phillips, Gary E. Swan, Laura Lazzeroni, J. David Clark, Atul J. Butte, Martin S. Angst
2011 Misc conf
Matching Cancer Genomes to Established Cell Lines for Personalized Oncology.
Pacific Symposium on Biocomputing
Joel Dudley, Rong Chen, Atul J. Butte
2011 J jnl
ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression.
Bioinform.
Jesse M. Engreitz, Rong Chen, Alexander A. Morgan, Joel Dudley, Rohan Mallelwar, Atul J. Butte
2011 Misc conf
The Reference Human Genome Demonstrates High Risk of Type 1 Diabetes and Other Disorders.
Pacific Symposium on Biocomputing
Rong Chen, Atul J. Butte
2010 J jnl
Content-based microarray search using differential expression profiles.
BMC Bioinform.
Jesse M. Engreitz, Alexander A. Morgan, Joel Dudley, Rong Chen, Rahul Thathoo, Russ B. Altman, Atul J. Butte
2010 J jnl
Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions.
PLoS Comput. Biol.
Rong Chen, Tara K. Sigdel, Li Li, Neeraja Kambham, Joel Dudley, Szu-chuan Hsieh, R. Bryan Klassen, Amery Chen, Tuyen Caohuu, Alexander A. Morgan, Hannah A. Valantine, Kiran K. Khush, Minnie M. Sarwal, Atul J. Butte
2010 J jnl
Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets.
PLoS Comput. Biol.
Silpa Suthram, Joel Dudley, Annie P. Chiang, Rong Chen, Trevor Hastie, Atul J. Butte
2009 J jnl
Ontology-driven indexing of public datasets for translational bioinformatics.
BMC Bioinform.
Nigam H. Shah, Clément Jonquet, Annie P. Chiang, Atul J. Butte, Rong Chen, Mark A. Musen
2008 J jnl
GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed.
BMC Bioinform.
Rong Chen, Rohan Mallelwar, Ajit Thosar, Shivkumar Venkatasubrahmanyam, Atul J. Butte
2007 Misc conf
Methodologies for Extracting Functional Pharmacogenomic Experiments from International Repository.
AMIA
Yi-An Lin, Annie P. Chiang, Ray Lin, Peggy Yao, Rong Chen, Atul J. Butte
2006 Misc conf
Finding Disease-Related Genomic Experiments Within an International Repository: First Steps in Translational Bioinformatics.
AMIA
Atul J. Butte, Rong Chen