Roman G. Efremov

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2024 J jnl
Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen.
Nat. Comput. Sci.
Vadim K. Karnaukhov, Dmitrii S. Shcherbinin, Anton O. Chugunov, Dmitriy M. Chudakov, Roman G. Efremov, Ivan V. Zvyagin, Mikhail Shugay
2021 J jnl
Stepwise Insertion of Cobra Cardiotoxin CT2 into a Lipid Bilayer Occurs as an Interplay of Protein and Membrane "Dynamic Molecular Portraits".
J. Chem. Inf. Model.
Anastasia G. Konshina, Peter V. Dubovskii, Roman G. Efremov
2019 J jnl
Dielectric-Dependent Strength of Interlipid Hydrogen Bonding in Biomembranes: Model Case Study.
J. Chem. Inf. Model.
Roman G. Efremov
2017 J jnl
Cardiotoxins: Functional Role of Local Conformational Changes.
J. Chem. Inf. Model.
Anastasia G. Konshina, Nikolay A. Krylov, Roman G. Efremov
2014 J jnl
Deciphering Fine Molecular Details of Proteins' Structure and Function with a
J. Chem. Inf. Model.
Anna D. Koromyslova, Anton O. Chugunov, Roman G. Efremov
2014 J jnl
PREDDIMER: a web server for prediction of transmembrane helical dimers.
Bioinform.
Anton A. Polyansky, Anton O. Chugunov, Pavel E. Volynsky, Nikolay A. Krylov, Dmitry E. Nolde, Roman G. Efremov
2009 J jnl
PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes.
Bioinform.
Timothy V. Pyrkov, Anton O. Chugunov, Nikolay A. Krylov, Dmitry E. Nolde, Roman G. Efremov
2007 J jnl
Computer Simulations of Membrane-Lytic peptides: Perspectives in Drug Design.
J. Bioinform. Comput. Biol.
Anton A. Polyansky, Pavel E. Volynsky, Roman G. Efremov
2007 J jnl
Docking of ATP to Ca-ATPase: Considering Protein Domain Motions.
J. Chem. Inf. Model.
Timothy V. Pyrkov, Yuri A. Kosinsky, Alexander S. Arseniev, John P. Priestle, Edgar Jacoby, Roman G. Efremov
2007 J jnl
Method To Assess Packing Quality of Transmembrane α-Helices in Proteins, 1. Parametrization Using Structural Data.
J. Chem. Inf. Model.
Anton O. Chugunov, Valery N. Novoseletsky, Dmitry E. Nolde, Alexander S. Arseniev, Roman G. Efremov
2007 J jnl
Method To Assess Packing Quality of Transmembrane α-Helices in Proteins, 2. Validation by "Correct vs Misleading" Test.
J. Chem. Inf. Model.
Anton O. Chugunov, Valery N. Novoseletsky, Dmitry E. Nolde, Alexander S. Arseniev, Roman G. Efremov
2006 J jnl
Association of transmembrane helices: what determines assembling of a dimer?
J. Comput. Aided Mol. Des.
Roman G. Efremov, Yana A. Vereshaga, Pavel E. Volynsky, Dmitry E. Nolde, Alexander S. Arseniev
2004 J jnl
Development of the force field parameters for phosphoimidazole and phosphohistidine.
J. Comput. Chem.
Yuri A. Kosinsky, Pavel E. Volynsky, Philippe Lagant, Gérard Vergoten, Ei-Ichiro Suzuki, Alexander S. Arseniev, Roman G. Efremov