Roman A. Laskowski

28 papers Journal 27Unranked 1
YearRankTypeTitle / Venue / Authors
2020 J jnl
An automated protocol for modelling peptide substrates to proteases.
BMC Bioinform.
Rodrigo Ochoa, Mikhail D. Magnitov, Roman A. Laskowski, Pilar Cossio, Janet M. Thornton
2020 J jnl
MGOS: A library for molecular geometry and its operating system.
Comput. Phys. Commun.
Deok-Soo Kim, Joonghyun Ryu, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Sangwha Kim, Roman A. Laskowski, Kokichi Sugihara, Jong Bhak, Seong Eon Ryu
2019 J jnl
MGOS: A Library for Molecular Geometry and its Operating System.
CoRR
Deok-Soo Kim, Joonghyun Ryu, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Sangwha Kim, Roman A. Laskowski, Kokichi Sugihara, Jong Bhak, Seong Eon Ryu
2019 J jnl
VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations.
Bioinform.
James D. Stephenson, Roman A. Laskowski, Andrew Nightingale, Matthew E. Hurles, Janet M. Thornton
2016 J jnl
BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization.
Nucleic Acids Res.
Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Roman A. Laskowski, Seong Eon Ryu, Deok-Soo Kim
2015 J jnl
BetaCavityWeb: a webserver for molecular voids and channels.
Nucleic Acids Res.
Jae-Kwan Kim, Youngsong Cho, Mokwon Lee, Roman A. Laskowski, Seong Eon Ryu, Kokichi Sugihara, Deok-Soo Kim
2015 J jnl
CATH: comprehensive structural and functional annotations for genome sequences.
Nucleic Acids Res.
Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo
2014 J jnl
Anatomy of enzyme channels.
BMC Bioinform.
Lukás Pravda, Karel Berka, Radka Svobodová Vareková, David Sehnal, Pavel Banás, Roman A. Laskowski, Jaroslav Koca, Michal Otyepka
2014 J jnl
PDBsum additions.
Nucleic Acids Res.
Tjaart A. P. de Beer, Karel Berka, Janet M. Thornton, Roman A. Laskowski
2013 J jnl
Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset.
PLoS Comput. Biol.
Tjaart A. P. de Beer, Roman A. Laskowski, Sarah L. Parks, Botond Sipos, Nick Goldman, Janet M. Thornton
2012 J jnl
Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies.
PLoS Comput. Biol.
Nicholas Furnham, Ian Sillitoe, Gemma L. Holliday, Alison L. Cuff, Roman A. Laskowski, Christine A. Orengo, Janet M. Thornton
2012 J jnl
FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.
Nucleic Acids Res.
Nicholas Furnham, Ian Sillitoe, Gemma L. Holliday, Alison L. Cuff, Syed Asad Rahman, Roman A. Laskowski, Christine A. Orengo, Janet M. Thornton
2011 J jnl
LigPlot+: Multiple Ligand-Protein Interaction Diagrams for Drug Discovery.
J. Chem. Inf. Model.
Roman A. Laskowski, Mark B. Swindells
2010 J jnl
ArchSchema: a tool for interactive graphing of related Pfam domain architectures.
Bioinform.
Asif U. Tamuri, Roman A. Laskowski
2009 J jnl
PDBsum new things.
Nucleic Acids Res.
Roman A. Laskowski
2009 J jnl
Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure.
PLoS Comput. Biol.
John A. Capra, Roman A. Laskowski, Janet M. Thornton, Mona Singh, Thomas A. Funkhouser
2009 J jnl
WSsas: a web service for the annotation of functional residues through structural homologues.
Bioinform.
David Talavera, Roman A. Laskowski, Janet M. Thornton
2007 J jnl
Enhancing the functional annotation of PDB structures in PDBsum using key figures extracted from the literature.
Bioinform.
Roman A. Laskowski
2007 J jnl
Variation of geometrical and physicochemical properties in protein binding pockets and their ligands.
BMC Bioinform.
Abdullah Kahraman, Richard J. Morris, Roman A. Laskowski, Janet M. Thornton
2005 J jnl
PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids.
Nucleic Acids Res.
Roman A. Laskowski, Victor V. Chistyakov, Janet M. Thornton
2005 J jnl
ProFunc: a server for predicting protein function from 3D structure.
Nucleic Acids Res.
Roman A. Laskowski, James D. Watson, Janet M. Thornton
2002 J jnl
Detecting cryptically simple protein sequences using the SIMPLE algorithm.
Bioinform.
M. Mar Albà, Roman A. Laskowski, John M. Hancock
2001 J jnl
Amino acid?base interactions: a three-dimensional analysis of protein?DNA interactions at an atomic level.
Nucleic Acids Res.
Nicholas M. Luscombe, Roman A. Laskowski, Janet M. Thornton
2001 J jnl
PDBsum: summaries and analyses of PDB structures.
Nucleic Acids Res.
Roman A. Laskowski
1999 J jnl
BLEEP - potential of mean force describing protein-ligand interactions: I. Generating potential.
J. Comput. Chem.
John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Janet M. Thornton
1999 J jnl
BLEEP - potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data.
J. Comput. Chem.
John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Mark J. Forster, Janet M. Thornton
1998 J jnl
Dihydrofolate reductase: A potential drug target in trypanosomes and leishmania.
J. Comput. Aided Mol. Des.
Fabio Zuccotto, Andrew C. R. Martin, Roman A. Laskowski, Janet M. Thornton, Ian H. Gilbert
1998 — conf
[Invited Lecture] Protein Folds and Functions.
German Conference on Bioinformatics
Janet M. Thornton, Andrew C. R. Martin, Christine A. Orengo, Duncan Milburn, Roman A. Laskowski