Rolf Apweiler

109 papers A 1Misc 1Journal 87Unranked 17
YearRankTypeTitle / Venue / Authors
2022 J jnl
The European Bioinformatics Institute (EMBL-EBI) in 2021.
Nucleic Acids Res.
Gaia Cantelli, Alex Bateman, Cath Brooksbank, Anton I. Petrov, Rahuman S. Malik-Sheriff, Michele Ide-Smith, Henning Hermjakob, Paul Flicek, Rolf Apweiler, Ewan Birney, Johanna R. McEntyre
2021 J jnl
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing.
Nucleic Acids Res.
Peter W. Harrison, Rodrigo Lopez, Nadim Rahman, Stefan Gutnick Allen, Raheela Aslam, Nicola Buso, Carla A. Cummins, Yasmin Fathy, Eloy Felix, Mihai Glont, Suran Jayathilaka, Sandeep Kadam, Manish Kumar, Katharina B. Lauer, Geetika Malhotra, Abayomi Mosaku, Ossama Edbali, Young Mi Park, Andrew Parton, Matt Pearce, Jose Francisco Estrada pena, Joseph Rossetto, Craig Russell, Sandeep Selvakumar, Xènia Pérez Sitjà, Alexey Sokolov, Ross Thorne, Marianna Ventouratou, Peter Walter, Galabina Yordanova, Amonida Zadissa, Guy Cochrane, Niklas Blomberg, Rolf Apweiler
2021 J jnl
The European Bioinformatics Institute: empowering cooperation in response to a global health crisis.
Nucleic Acids Res.
Gaia Cantelli, Guy Cochrane, Cath Brooksbank, Ellen M. McDonagh, Paul Flicek, Johanna R. McEntyre, Ewan Birney, Rolf Apweiler
2020 J jnl
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences.
Nucleic Acids Res.
Charles E. Cook, Oana Stroe, Guy Cochrane, Ewan Birney, Rolf Apweiler
2019 J jnl
The European Bioinformatics Institute in 2018: tools, infrastructure and training.
Nucleic Acids Res.
Charles E. Cook, Rodrigo Lopez, Oana Stroe, Guy Cochrane, Cath Brooksbank, Ewan Birney, Rolf Apweiler
2018 J jnl
The European Bioinformatics Institute in 2017: data coordination and integration.
Nucleic Acids Res.
Charles E. Cook, Mary Todd Bergman, Guy Cochrane, Rolf Apweiler, Ewan Birney
2016 J jnl
The European Bioinformatics Institute in 2016: Data growth and integration.
Nucleic Acids Res.
Charles E. Cook, Mary Todd Bergman, Robert D. Finn, Guy Cochrane, Ewan Birney, Rolf Apweiler
2014 J jnl
The European Bioinformatics Institute's data resources 2014.
Nucleic Acids Res.
Catherine Brooksbank, Mary Todd Bergman, Rolf Apweiler, Ewan Birney, Janet M. Thornton
2013 J jnl
Use of Gene Ontology Annotation to understand the peroxisome proteome in humans.
Database J. Biol. Databases Curation
Prudence Mutowo-Meullenet, Rachael P. Huntley, Emily C. Dimmer, Yasmin Alam-Faruque, Tony Sawford, Maria Jesus Martin, Claire O'Donovan, Rolf Apweiler
2012 J jnl
InterPro in 2011: new developments in the family and domain prediction database.
Nucleic Acids Res.
Sarah Hunter, Philip Jones, Alex L. Mitchell, Rolf Apweiler, Teresa K. Attwood, Alex Bateman, Thomas Bernard, David Binns, Peer Bork, Sarah W. Burge, Edouard De Castro, Penny C. Coggill, Matthew Corbett, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn, Matthew Fraser, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Conor McMenamin, Huaiyu Mi, Prudence Mutowo-Meullenet, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Sebastien Pesseat, Marco Punta, Antony F. Quinn, Catherine Rivoire, Amaia Sangrador-Vegas, Jeremy D. Selengut, Christian J. A. Sigrist, Maxim Scheremetjew, John G. Tate, Manjulapramila Thimmajanarthanan, Paul D. Thomas, Cathy H. Wu, Corin Yeats, Siew-Yit Yong
2012 J jnl
The UniProt-GO Annotation database in 2011.
Nucleic Acids Res.
Emily C. Dimmer, Rachael P. Huntley, Yasmin Alam-Faruque, Tony Sawford, Claire O'Donovan, Maria Jesus Martin, Benoit Bely, Paul Browne, Wei Mun Chan, Ruth Y. Eberhardt, Michael Gardner, Kati Laiho, Duncan Legge, Michele Magrane, Klemens Pichler, Diego Poggioli, Harminder Sehra, Andrea H. Auchincloss, Kristian B. Axelsen, Marie-Claude Blatter, Emmanuel Boutet, Silvia Braconi-Quintaje, Lionel Breuza, Alan J. Bridge, Elisabeth Coudert, Anne Estreicher, Maria Livia Famiglietti, Serenella Ferro-Rojas, Marc Feuermann, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Janet James, Silvia Jimenez, Florence Jungo, Guillaume Keller, Phillippe Lemercier, Damien Lieberherr, Patrick Masson, Madelaine Moinat, Ivo Pedruzzi, Sylvain Poux, Catherine Rivoire, Bernd Roechert, Michel Schneider, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Lydie Bougueleret, Ghislaine Argoud-Puy, Isabelle Cusin, Paula Duek Roggli, Ioannis Xenarios, Rolf Apweiler
2010 J jnl
Make Research Data Public?---Not Always so Simple: A Dialogue for Statisticians and Science Editors
CoRR
Nell Sedransk, Lawrence H. Cox, Deborah Nolan, Keith Soper, Clifford H. Spiegelman, Linda J. Young, Katrina L. Kelner, Robert A. Moffitt, Ani Thakar, M. Jordan Raddick, Edward J. Ungvarsky, Richard W. Carlson, Rolf Apweiler
2010 J jnl
On the Importance of Comprehensible Classification Models for Protein Function Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alex Alves Freitas, Daniela Wieser, Rolf Apweiler
2009 J jnl
InterPro: the integrative protein signature database.
Nucleic Acids Res.
Sarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats
2009 J jnl
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.
Bioinform.
Kai Ye, Marcel H. Schulz, Quan Long, Rolf Apweiler, Zemin Ning
2009 J jnl
QuickGO: a user tutorial for the web-based Gene Ontology browser.
Database J. Biol. Databases Curation
Rachael P. Huntley, David Binns, Emily Dimmer, Daniel Barrell, Claire O'Donovan, Rolf Apweiler
2009 J jnl
QuickGO: a web-based tool for Gene Ontology searching.
Bioinform.
David Binns, Emily Dimmer, Rachael P. Huntley, Daniel Barrell, Claire O'Donovan, Rolf Apweiler
2009 J jnl
The GOA database in 2009 - an integrated Gene Ontology Annotation resource.
Nucleic Acids Res.
Daniel Barrell, Emily Dimmer, Rachael P. Huntley, David Binns, Claire O'Donovan, Rolf Apweiler
2009 — ch.
Verification of Uncurated Protein Annotations.
Information Retrieval in Biomedicine
Francisco M. Couto, Mário J. Silva, Vivian Lee, Emily Dimmer, Evelyn Camon, Rolf Apweiler
2008 J jnl
Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database.
Nucleic Acids Res.
Guy Cochrane, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, James K. Bonfield, Lawrence Bower, Paul Browne, Matias Castro, Tony Cox, Fehmi Demiralp, Ruth Y. Eberhardt, Nadeem Faruque, Gemma Hoad, Mikyung Jang, Tamara Kulikova, Alberto Labarga, Rasko Leinonen, Steven Leonard, Quan Lin, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Sheila Plaister, Stephen Robinson, Siamak Sobhany, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler, Tim J. P. Hubbard, Ewan Birney
2008 J jnl
The Ontology Lookup Service: more data and better tools for controlled vocabulary queries.
Nucleic Acids Res.
Richard G. Côté, Philip Jones, Lennart Martens, Rolf Apweiler, Henning Hermjakob
2008 J jnl
UniProtJAPI: a remote API for accessing UniProt data.
Bioinform.
Samuel Patient, Daniela Wieser, Michael Kleen, Ernst Kretschmann, Maria Jesus Martin, Rolf Apweiler
2007 — conf
An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases.
German Conference on Bioinformatics
Sebastian Klie, Lennart Martens, Juan Antonio Vizcaíno, Richard G. Côté, Philip Jones, Rolf Apweiler, Alexander Hinneburg, Henning Hermjakob
2007 — conf
Analysing latent topics in large-scale proteomics.
LWA
Sebastian Klie, Alexander Hinneburg, Lennart Martens, Juan Antonio Vizcaíno, Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob
2007 J jnl
EMBL Nucleotide Sequence Database in 2006.
Nucleic Acids Res.
Tamara Kulikova, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Lawrence Bower, Paul Browne, Matias Castro, Guy Cochrane, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, Gemma Hoad, Carola Kanz, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Sheila Plaister, Siamak Sobhany, Peter Stoehr, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
2007 J jnl
IntAct - open source resource for molecular interaction data.
Nucleic Acids Res.
Samuel Kerrien, Yasmin Alam-Faruque, Bruno Aranda, I. Bancarz, Alan J. Bridge, C. Derow, Emily Dimmer, Marc Feuermann, A. Friedrichsen, Rachael P. Huntley, C. Kohler, Jyoti Khadake, C. Leroy, A. Liban, C. Lieftink, Luisa Montecchi-Palazzi, Sandra E. Orchard, Judith E. Risse, Karine Robbe, Bernd Roechert, David Thorneycroft, Y. Zhang, Rolf Apweiler, Henning Hermjakob
2007 J jnl
New developments in the InterPro database.
Nucleic Acids Res.
Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise C. Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats
2007 J jnl
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.
BMC Bioinform.
Richard G. Côté, Philip Jones, Lennart Martens, Samuel Kerrien, Florian Reisinger, Quan Lin, Rasko Leinonen, Rolf Apweiler, Henning Hermjakob
2006 J jnl
EMBL Nucleotide Sequence Database: developments in 2005.
Nucleic Acids Res.
Guy Cochrane, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Wendy Baker, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Paul Browne, Alexandra van den Broek, Matias Castro, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, John Gamble, Carola Kanz, Tamara Kulikova, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Michelle McHale, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Siamak Sobhany, Peter Stoehr, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
2006 J jnl
PRIDE: a public repository of protein and peptide identifications for the proteomics community.
Nucleic Acids Res.
Philip Jones, Richard G. Côté, Lennart Martens, Antony F. Quinn, Chris F. Taylor, William Derache, Henning Hermjakob, Rolf Apweiler
2006 J jnl
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries.
BMC Bioinform.
Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob
2006 J jnl
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic Acids Res.
Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek
2006 J jnl
UniSave: the UniProtKB Sequence/Annotation Version database.
Bioinform.
Rasko Leinonen, Francesco Nardone, Weimin Zhu, Rolf Apweiler
2005 J jnl
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
BMC Bioinform.
Evelyn Camon, Daniel Barrell, Emily Dimmer, Vivian Lee, Michele Magrane, John Maslen, David Binns, Rolf Apweiler
2005 — ch.
Biological Databases: Infrastructure, Content and Integration.
Data Analysis and Visualization in Genomics and Proteomics
Allyson L. Williams, Paul J. Kersey, Manuela Pruess, Rolf Apweiler
2005 J jnl
Dasty and UniProt DAS: a perfect pair for protein feature visualization.
Bioinform.
Philip Jones, Nisha Vinod, Thomas A. Down, Andre Hackmann, Andreas Kähäri, Ernst Kretschmann, Antony F. Quinn, Daniela Wieser, Henning Hermjakob, Rolf Apweiler
2005 J jnl
Do you do text?
Bioinform.
Christian Blaschke, Alexander S. Yeh, Evelyn Camon, Marc E. Colosimo, Rolf Apweiler, Lynette Hirschman, Alfonso Valencia
2005 J jnl
E-MSD: an integrated data resource for bioinformatics.
Nucleic Acids Res.
Samir S. Velankar, P. McNeil, Virginie Mittard-Runte, A. Suarez, Daniel Barrell, Rolf Apweiler, Kim Henrick
2005 J jnl
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.
Nucleic Acids Res.
Paul J. Kersey, Lawrence Bower, Lorna Morris, Alan Horne, Robert Petryszak, Carola Kanz, Alexander Kanapin, Ujjwal Das, Karine Michoud, Isabelle Phan, Alexandre Gattiker, Tamara Kulikova, Nadeem Faruque, Karyn Duggan, Peter McLaren, Britt Reimholz, Laurent Duret, Simon Penel, Ingmar Reuter, Rolf Apweiler
2005 J jnl
InterPro, progress and status in 2005.
Nucleic Acids Res.
Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu
2005 J jnl
InterProScan: protein domains identifier.
Nucleic Acids Res.
Emmanuel Quevillon, Ville Silventoinen, Sharmila Pillai, Nicola Harte, Nicola J. Mulder, Rolf Apweiler, Rodrigo Lopez
2005 J jnl
The EMBL Nucleotide Sequence Database.
Nucleic Acids Res.
Carola Kanz, Philippe Aldebert, Nicola Althorpe, Wendy Baker, Alastair Baldwin, Kirsty Bates, Paul Browne, Alexandra van den Broek, Matias Castro, Guy Cochrane, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, John Gamble, Federico Garcia Diez, Nicola Harte, Tamara Kulikova, Quan Lin, Vincent Lombard, Rodrigo Lopez, Renato Mancuso, Michelle McHale, Francesco Nardone, Ville Silventoinen, Siamak Sobhany, Peter Stoehr, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
2005 J jnl
The Universal Protein Resource (UniProt).
Nucleic Acids Res.
Amos Bairoch, Rolf Apweiler, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh
2005 Misc conf
The Use of Common Ontologies and Controlled Vocabularies to Enable Data Exchange and Deposition for Complex Proteomic Experiments.
Pacific Symposium on Biocomputing
Sandra E. Orchard, Luisa Montecchi-Palazzi, Henning Hermjakob, Rolf Apweiler
2005 J jnl
The predictive power of the CluSTr database.
Bioinform.
Robert Petryszak, Ernst Kretschmann, Daniela Wieser, Rolf Apweiler
2004 — conf
Filtering erroneous protein annotation.
ISMB/ECCB (Supplement of Bioinformatics)
Daniela Wieser, Ernst Kretschmann, Rolf Apweiler
2004 J jnl
GOA? - Use of Gene Ontology Annotation (GOA) for biological interpretation of '-omics' data and for validation of automatic annotation tools.
Silico Biol.
Vivian Lee, Evelyn Camon, Emily Dimmer, Daniel Barrell, Rolf Apweiler
2004 J jnl
IntAct: an open source molecular interaction database.
Nucleic Acids Res.
Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler
2004 J jnl
IntEnz, the integrated relational enzyme database.
Nucleic Acids Res.
Astrid Fleischmann, Michael Darsow, Kirill Degtyarenko, Wolfgang Fleischmann, Sinéad Boyce, Kristian B. Axelsen, Amos Bairoch, Dietmar Schomburg, Keith F. Tipton, Rolf Apweiler
2004 J jnl
Integrating Genomic and Proteomic Data: The Integr8 Project.
J. Integr. Bioinform.
Manuela Pruess, Paul J. Kersey, Rolf Apweiler
2004 J jnl
Synergy between medical informatics and bioinformatics: facilitating genomic medicine for future health care.
J. Biomed. Informatics
Fernando Martín-Sánchez, Ilias Iakovidis, S. Nørager, Victor Maojo, Piet C. de Groen, Johan van der Lei, T. Jones, Klaus Abraham-Fuchs, Rolf Apweiler, Ankica Babic
2004 J jnl
The EMBL Nucleotide Sequence Database.
Nucleic Acids Res.
Tamara Kulikova, Philippe Aldebert, Nicola Althorpe, Wendy Baker, Kirsty Bates, Paul Browne, Alexandra van den Broek, Guy Cochrane, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, Maria Garcia-Pastor, Nicola Harte, Carola Kanz, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Renato Mancuso, Michelle McHale, Francesco Nardone, Ville Silventoinen, Peter Stoehr, Guenter Stoesser, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
2004 J jnl
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
Nucleic Acids Res.
Evelyn Camon, Michele Magrane, Daniel Barrell, Vivian Lee, Emily Dimmer, John Maslen, David Binns, Nicola Harte, Rodrigo Lopez, Rolf Apweiler
2004 J jnl
The Integr8 project - a resource for genomic and proteomic data.
Silico Biol.
Manuela Pruess, Paul J. Kersey, Rolf Apweiler
2004 J jnl
UniProt archive.
Bioinform.
Rasko Leinonen, Federico Garcia Diez, David Binns, Wolfgang Fleischmann, Rodrigo Lopez, Rolf Apweiler
2004 J jnl
UniProt: the Universal Protein knowledgebase.
Nucleic Acids Res.
Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh
2003 J jnl
Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters.
Nucleic Acids Res.
Evgenia V. Kriventseva, Florence Servant, Rolf Apweiler
2003 J jnl
The European Bioinformatics Institute's data resources.
Nucleic Acids Res.
Catherine Brooksbank, Evelyn Camon, Midori A. Harris, Michele Magrane, Maria Jesus Martin, Nicola J. Mulder, Claire O'Donovan, Helen E. Parkinson, Mary Ann Tuli, Rolf Apweiler, Ewan Birney, Alvis Brazma, Kim Henrick, Rodrigo Lopez, Guenter Stoesser, Peter Stoehr, Graham Cameron
2003 J jnl
The Gene Ontology Annotation (GOA) Database - An integrated resource of GO annotations to the UniProt Knowledgebase.
Silico Biol.
Evelyn Camon, Daniel Barrell, Vivian Lee, Emily Dimmer, Rolf Apweiler
2003 J jnl
The InterPro Database, 2003 brings increased coverage and new features.
Nucleic Acids Res.
Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov
2003 J jnl
The Proteome Analysis database: a tool for the in silico analysis of whole proteomes.
Nucleic Acids Res.
Manuela Pruess, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler
2003 J jnl
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
Nucleic Acids Res.
Brigitte Boeckmann, Amos Bairoch, Rolf Apweiler, Marie-Claude Blatter, Anne Estreicher, Elisabeth Gasteiger, Maria Jesus Martin, Karine Michoud, Claire O'Donovan, Isabelle Phan, Sandrine Pilbout, Michel Schneider
2002 J jnl
Applications of InterPro in Protein Annotation and Genome Analysis.
Briefings Bioinform.
Margaret Biswas, Joseph F. O'Rourke, Evelyn Camon, Gillian Fraser, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler
2002 — conf
Automation of Protein Sequence Characterization and Its Application in Whole Proteome Analysis.
Gene Regulations and Metabolism
Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Evgenia V. Kriventseva, Nicola J. Mulder
2002 — ch.
Bioinformatics: Using the Molecular Biology Data.
Essentials of Genomics and Bioinformatics
Evgeni M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, Thure Etzold
2002 J jnl
Consistent Integration of Non-reliable Heterogeneous Information Resources Applied to the Annotation of Transmembrane Proteins.
Comput. Chem.
Steffen Möller, Michael Schroeder, Rolf Apweiler
2002 J jnl
Erratum: Evaluation of methods for the prediction of membrane spanning regions.
Bioinform.
Steffen Möller, Michael D. R. Croning, Rolf Apweiler
2002 J jnl
High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL.
Briefings Bioinform.
Claire O'Donovan, Maria Jesus Martin, Alexandre Gattiker, Elisabeth Gasteiger, Amos Bairoch, Rolf Apweiler
2002 J jnl
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites
Briefings Bioinform.
Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist
2002 J jnl
Interactive InterPro-based comparisons of proteins in whole genomes.
Bioinform.
Alexander Kanapin, Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Florence Servant, Evgeni M. Zdobnov
2002 J jnl
Organisation and standardisation of information in SWISS_PROT and TrEMBL.
Data Sci. J.
Michele Magrane, Rolf Apweiler
2002 J jnl
The EBI SRS server-new features.
Bioinform.
Evgeni M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, Thure Etzold
2002 J jnl
The EBI SRS server-recent developments.
Bioinform.
Evgeni M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, Thure Etzold
2001 J jnl
Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT.
Bioinform.
Ernst Kretschmann, Wolfgang Fleischmann, Rolf Apweiler
2001 — conf
Automatic rule generation for protein annotation with the C4.5 data-mining algorithm applied on peptides in Ensembl.
German Conference on Bioinformatics
Ernst Kretschmann, Rolf Apweiler
2001 J jnl
CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins.
Nucleic Acids Res.
Evgenia V. Kriventseva, Wolfgang Fleischmann, Evgeni M. Zdobnov, Rolf Apweiler
2001 J jnl
Evaluation of methods for the prediction of membrane spanning regions.
Bioinform.
Steffen Möller, Michael D. R. Croning, Rolf Apweiler
2001 J jnl
Functional Information in SWISS-PROT: the Basis for Large-scale Characterisation of Protein Sequences.
Briefings Bioinform.
Rolf Apweiler
2001 — conf
IntEnz - The Enzyme Database in Oracle.
German Conference on Bioinformatics
Astrid Fleischmann, Michael Darsow, Kirill Degtyarenko, Rolf Apweiler
2001 J jnl
InterProScan - an integration platform for the signature-recognition methods in InterPro.
Bioinform.
Evgeni M. Zdobnov, Rolf Apweiler
2001 J jnl
Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.
Nucleic Acids Res.
Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Evgeni M. Zdobnov
2001 J jnl
Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al.
Bioinform.
Rolf Apweiler, Paul J. Kersey, Vivien Junker, Amos Bairoch
2001 J jnl
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Res.
Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
2001 — conf
Towards a New Curation Environment for the TrEMBL Database.
German Conference on Bioinformatics
Kai J. Runte, Henning Hermjakob, Rolf Apweiler
2000 J jnl
A collection of well characterised integral membrane proteins.
Bioinform.
Steffen Möller, Evgenia V. Kriventseva, Rolf Apweiler
2000 J jnl
A comparison of signal sequence prediction methods using a test set of signal peptides.
Bioinform.
Kerstin M. L. Menne, Henning Hermjakob, Rolf Apweiler
2000 J jnl
InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinform.
Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
2000 — conf
Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes.
German Conference on Bioinformatics
Margaret Biswas, Rolf Apweiler, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Evgeni M. Zdobnov
2000 — conf
The EBI SRS Server: Recent Developments.
German Conference on Bioinformatics
Evgeni M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, Thure Etzold
2000 J jnl
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.
Nucleic Acids Res.
Amos Bairoch, Rolf Apweiler
2000 J jnl
VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL.
Bioinform.
Paul J. Kersey, Henning Hermjakob, Rolf Apweiler
1999 J jnl
A novel method for automatic functional annotation of proteins.
Bioinform.
Wolfgang Fleischmann, Steffen Möller, Alain Gateau, Rolf Apweiler
1999 J jnl
EDITtoTrEMBL: a distributed approach to high-quality automated protein sequence annotation.
Bioinform.
Steffen Möller, Ulf Leser, Wolfgang Fleischmann, Rolf Apweiler
1999 — conf
Facilitating context-sensitive queries: A tool to rephrase SWISS-PROT.
German Conference on Bioinformatics
Steffen Möller, Michael J. Wise, David P. Kreil, Michael Schroeder, D. Gilbest, Rolf Apweiler
1999 — conf
Feature Propagation - Semi Automatic transfer of position dependent SWISS-PROT annotation.
German Conference on Bioinformatics
Arno Velds, Henning Hermjakob, Rolf Apweiler
1999 J jnl
Removing redundancy in SWISS-PROT and TrEMBL.
Bioinform.
Claire O'Donovan, Maria Jesus Martin, Eric Glémet, Jean-Jacques Codani, Rolf Apweiler
1999 J jnl
Representation of functional information in the SWISS-PROT Data Bank.
Bioinform.
Vivien L. Junker, Rolf Apweiler, Amos Bairoch
1999 J jnl
Swissknife - 'lazy parsing' of SWISS-PROT entries.
Bioinform.
Henning Hermjakob, Wolfgang Fleischmann, Rolf Apweiler
1999 J jnl
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.
Nucleic Acids Res.
Amos Bairoch, Rolf Apweiler
1998 — conf
A novel method for automatic and reliable functional annotation of proteins.
German Conference on Bioinformatics
Wolfgang Fleischmann, Steffen Möller, Alain Gateau, Rolf Apweiler
1998 — conf
EDITtoTrEMBL: A distributed approach to high-quality automated protein sequence annotation.
German Conference on Bioinformatics
Steffen Möller, Ulf Leser, Wolfgang Fleischmann, Rolf Apweiler
1998 — conf
Removing Redundancy in SWISS-PROT and TrEMBL.
German Conference on Bioinformatics
Claire O'Donovan, Maria Jesus Martin, Eric Glémet, Jean-Jacques Codani, Rolf Apweiler
1998 — conf
SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world.
German Conference on Bioinformatics
Henning Hermjakob, Claire O'Donovan, Maria Jesus Martin, Fiona Lang, Rolf Apweiler
1998 J jnl
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.
Nucleic Acids Res.
Amos Bairoch, Rolf Apweiler
1997 A conf
Protein Sequence Annotation in the Genome Era: The Annotation Concept of SWISS-PROT + TREMBL.
ISMB
Rolf Apweiler, Alain Gateau, Sergio Contrino, Maria Jesus Martin, Vivien Junker, Claire O'Donovan, Fiona Lang, Nicoletta Mitaritonna, Stephanie Kappus, Amos Bairoch
1997 J jnl
The SWISS-PROT protein sequence data bank and its supplement TrEMBL.
Nucleic Acids Res.
Amos Bairoch, Rolf Apweiler
1996 — conf
New Developments in Linking of Biological Databases and Computer-Generation of Annotations: SWISS-PROT and Its Computer-Annotated Supplement TREMBL.
German Conference on Bioinformatics - Selected Papers
Rolf Apweiler, Vivien Junker, Alain Gateau, Claire O'Donovan, Fiona Lang, Amos Bairoch
1996 — conf
New Developments in the Linking of Biological Databases and Computer-Generation of Annotation.
German Conference on Bioinformatics
Rolf Apweiler, Vivien Junker, Alain Gateau, Claire O'Donovan, Fiona Lang, Amos Bairoch
1996 J jnl
The SWISS-PROT protein sequence data bank and its new supplement TREMBL.
Nucleic Acids Res.
Amos Bairoch, Rolf Apweiler