Roland Wittler

28 papers B 3C 3Journal 18Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
SANS ambages: phylogenomics with abundance-filter, multi-threading, and bootstrapping on amino-acid or genomic sequences.
BMC Bioinform.
Fabian Kolesch, Marco Sohn, Andreas Rempel, Pia Hippel, Roland Wittler
2021 J jnl
Detecting high-scoring local alignments in pangenome graphs.
Bioinform.
Tizian Schulz, Roland Wittler, Sven Rahmann, Faraz Hach, Jens Stoye
2021 J jnl
SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction.
Bioinform.
Andreas Rempel, Roland Wittler
2020 J jnl
Alignment- and reference-free phylogenomics with colored de Bruijn graphs.
Algorithms Mol. Biol.
Roland Wittler
2019 C conf
Alignment- and Reference-Free Phylogenomics with Colored de Bruijn Graphs.
WABI
Roland Wittler
2019 J jnl
Alignment- and reference-free phylogenomics with colored de-Bruijn graphs.
CoRR
Roland Wittler
2019 J jnl
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies.
IEEE ACM Trans. Comput. Biol. Bioinform.
Nina Luhmann, Manuel Lafond, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve
2018 J jnl
Dynamic Alignment-Free and Reference-Free Read Compression.
J. Comput. Biol.
Guillaume Holley, Roland Wittler, Jens Stoye, Faraz Hach
2018 J jnl
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework.
IEEE ACM Trans. Comput. Biol. Bioinform.
Nina Luhmann, Cédric Chauve, Jens Stoye, Roland Wittler
2017 B conf
Dynamic Alignment-Free and Reference-Free Read Compression.
RECOMB
Guillaume Holley, Roland Wittler, Jens Stoye, Faraz Hach
2017 J jnl
Fast and Simple Jumbled Indexing for Binary RLE Strings.
CoRR
Luís Felipe I. Cunha, Simone Dantas, Travis Gagie, Roland Wittler, Luis A. B. Kowada, Jens Stoye
2017 B conf
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings.
CPM
Luís Felipe I. Cunha, Simone Dantas, Travis Gagie, Roland Wittler, Luis A. B. Kowada, Jens Stoye
2016 J jnl
Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage.
Algorithms Mol. Biol.
Guillaume Holley, Roland Wittler, Jens Stoye
2016 — conf
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies.
ISBRA
Nina Luhmann, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve
2016 J jnl
The SCJ small parsimony problem for weighted gene adjacencies (Extended version).
CoRR
Nina Luhmann, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve
2015 C conf
Bloom Filter Trie - A Data Structure for Pan-Genome Storage.
WABI
Guillaume Holley, Roland Wittler, Jens Stoye
2015 J jnl
Repeat- and error-aware comparison of deletions.
Bioinform.
Roland Wittler, Tobias Marschall, Alexander Schönhuth, Veli Mäkinen
2014 — conf
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework.
BSB
Nina Luhmann, Cédric Chauve, Jens Stoye, Roland Wittler
2013 J jnl
Correction: Unraveling overlapping deletions by agglomerative clustering.
BMC Genom.
Roland Wittler
2013 C conf
Linearization of ancestral multichromosomal genomes.
CTW
Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
2013 — ch.
The Potential of Family-Free Genome Comparison.
Models and Algorithms for Genome Evolution
Marília D. V. Braga, Cédric Chauve, Daniel Doerr, Katharina Jahn, Jens Stoye, Annelyse Thévenin, Roland Wittler
2013 J jnl
Unraveling overlapping deletions by agglomerative clustering.
BMC Genom.
Roland Wittler
2012 J jnl
Linearization of ancestral multichromosomal genomes.
BMC Bioinform.
Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
2011 J jnl
Consistency of Sequence-Based Gene Clusters.
J. Comput. Biol.
Roland Wittler, Ján Manuch, Murray Patterson, Jens Stoye
2011 J jnl
Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes.
BMC Bioinform.
Roland Wittler, Cédric Chauve
2011 B conf
Tractability Results for the Consecutive-Ones Property with Multiplicity.
CPM
Cédric Chauve, Ján Manuch, Murray Patterson, Roland Wittler
2010 — conf
Consistency of Sequence-Based Gene Clusters.
RECOMB-CG
Roland Wittler, Jens Stoye
2009 J jnl
A Unified Approach for Reconstructing Ancient Gene Clusters.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jens Stoye, Roland Wittler