Roland L. Dunbrack Jr.

22 papers A 1Journal 21
YearRankTypeTitle / Venue / Authors
2023 J jnl
The protein common assembly database (ProtCAD) - a comprehensive structural resource of protein complexes.
Nucleic Acids Res.
Qifang Xu, Roland L. Dunbrack Jr.
2022 J jnl
Kincore: a web resource for structural classification of protein kinases and their inhibitors.
Nucleic Acids Res.
Vivek Modi, Roland L. Dunbrack Jr.
2022 J jnl
PDBe-KB: collaboratively defining the biological context of structural data.
Nucleic Acids Res.
Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2020 J jnl
Better together: Elements of successful scientific software development in a distributed collaborative community.
PLoS Comput. Biol.
Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau
2019 J jnl
A new clustering and nomenclature for beta turns derived from high-resolution protein structures.
PLoS Comput. Biol.
Maxim V. Shapovalov, Slobodan Vucetic, Roland L. Dunbrack Jr.
2018 J jnl
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.
PLoS Comput. Biol.
Jared Adolf-Bryfogle, Oleksandr Kalyuzhniy, Michael Kubitz, Brian D. Weitzner, Xiaozhen Hu, Yumiko Adachi, William R. Schief, Roland L. Dunbrack Jr.
2015 J jnl
PyIgClassify: a database of antibody CDR structural classifications.
Nucleic Acids Res.
Jared Adolf-Bryfogle, Qifang Xu, Benjamin North, Andreas Lehmann, Roland L. Dunbrack Jr.
2013 J jnl
Charge asymmetry in the proteins of the outer membrane.
Bioinform.
Joanna S. G. Slusky, Roland L. Dunbrack Jr.
2012 J jnl
Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB.
Bioinform.
Qifang Xu, Roland L. Dunbrack Jr.
2011 J jnl
The protein common interface database (ProtCID) - a comprehensive database of interactions of homologous proteins in multiple crystal forms.
Nucleic Acids Res.
Qifang Xu, Roland L. Dunbrack Jr.
2010 J jnl
Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model.
PLoS Comput. Biol.
Daniel Ting, Guoli Wang, Maxim V. Shapovalov, Rajib Mitra, Michael I. Jordan, Roland L. Dunbrack Jr.
2010 J jnl
Will Widgets and Semantic Tagging Change Computational Biology?
PLoS Comput. Biol.
Philip E. Bourne, Bojan Beran, Chunxiao Bi, Wolfgang Bluhm, Roland L. Dunbrack Jr., Andreas Prlic, Greg B. Quinn, Peter W. Rose, Raship Shah, Wendy Tao, Brian D. Weitzner, Benjamin T. Yukich
2007 J jnl
BioDownloader: bioinformatics downloads and updates in a few clicks.
Bioinform.
Maxim V. Shapovalov, Adrian A. Canutescu, Roland L. Dunbrack Jr.
2007 J jnl
ProtBuD: a database of biological unit structures of protein families and superfamilies.
Bioinform.
Qifang Xu, Adrian A. Canutescu, Zoran Obradovic, Roland L. Dunbrack Jr.
2006 J jnl
ProtBuD: a database of biological unit structures of protein families and superfamilies.
Bioinform.
Qifang Xu, Adrian A. Canutescu, Zoran Obradovic, Roland L. Dunbrack Jr.
2005 J jnl
MollDE: a homology modeling framework you can click with.
Bioinform.
Adrian A. Canutescu, Roland L. Dunbrack Jr.
2005 J jnl
PISCES: recent improvements to a PDB sequence culling server.
Nucleic Acids Res.
Guoli Wang, Roland L. Dunbrack Jr.
2005 J jnl
Quasi-consensus-based comparison of profile hidden Markov models for protein sequences.
Bioinform.
Robel Y. Kahsay, Guoli Wang, Guang R. Gao, Li Liao, Roland L. Dunbrack Jr.
2003 J jnl
PISCES: a protein sequence culling server.
Bioinform.
Guoli Wang, Roland L. Dunbrack Jr.
2002 J jnl
BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster.
Bioinform.
Jeffrey D. Grant, Roland L. Dunbrack Jr., Frank J. Manion, Michael F. Ochs
2002 J jnl
CASA: a server for the critical assessment of protein sequence alignment accuracy.
Bioinform.
Robel Y. Kahsay, Guoli Wang, Nataraj Dongre, Guang R. Gao, Roland L. Dunbrack Jr.
2000 A conf
Genomic Fold Assignment and Rational Modeling of Proteins of Biological Interest.
ISMB
J. Michael Sauder, Roland L. Dunbrack Jr.