Roland Eils

137 papers A* 3A 4B 7C 2Journal 67Unranked 54
YearRankTypeTitle / Venue / Authors
2026 J jnl
Managing workflow executions with WESkit.
Bioinform.
Valentin Schneider-Lunitz, Philip R. Kensche, Landfried Kraatz, Philipp Strubel, Stefan Borufka, Gurudeep Parala, Alexander Kanitz, Roland Eils, Ivo Buchhalter, Sven Twardziok
2025 J jnl
A review of breast cancer histopathology image analysis with deep learning: Challenges, innovations, and clinical integration.
Image Vis. Comput.
Inayatul Haq, Zheng Gong, Haomin Liang, Wei Zhang, Rashid Khan, Lei Gu, Roland Eils, Yan Kang, Bingding Huang
2025 J jnl
Cohort-Based Active Modality Acquisition.
CoRR
Tillmann Rheude, Roland Eils, Benjamin Wild
2025 J jnl
FHIRconnect: Towards a seamless integration of openEHR and FHIR.
CoRR
Severin Kohler, Jordi Piera-Jimenez, Michael Anywar, Lars Fuhrmann, Heather Leslie, Maximilian Meixner, Julian Saß, Florian Kärcher, Diego Boscá, Birger Haarbrandt, Michael Marschollek, Roland Eils
2025 J jnl
Fusion or Confusion? Multimodal Complexity Is Not All You Need.
CoRR
Tillmann Rheude, Roland Eils, Benjamin Wild
2025 J jnl
JanusDNA: A Powerful Bi-directional Hybrid DNA Foundation Model.
CoRR
Qihao Duan, Bingding Huang, Zhenqiao Song, Irina Lehmann, Lei Gu, Roland Eils, Benjamin Wild
2025 J jnl
Large Language Models are Powerful EHR Encoders.
CoRR
Stefan Hegselmann, Georg von Arnim, Tillmann Rheude, Noel Kronenberg, David A. Sontag, Gerhard Hindricks, Roland Eils, Benjamin Wild
2023 A* conf
Differentiable sorting for censored time-to-event data.
NeurIPS
Andre Vauvelle, Benjamin Wild, Roland Eils, Spiros C. Denaxas
2023 J jnl
Diffsurv: Differentiable sorting for censored time-to-event data.
CoRR
Andre Vauvelle, Benjamin Wild, Sera Aylin Cakiroglu, Roland Eils, Spiros C. Denaxas
2023 — conf
Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities.
CoRDI
Nils Hoffmann, Irena Maus, Sebastian Beier, Peter Belmann, Jan Krüger, Andreas Tauch, Alexander Goesmann, Roland Eils, Peer Bork, Oliver Kohlbacher, Ursula Kummer, Rolf Backofen, Ivo Buchhalter, Alexander Sczyrba
2023 J jnl
Eos and OMOCL: Towards a seamless integration of openEHR records into the OMOP Common Data Model.
J. Biomed. Informatics
Severin Kohler, Diego Boscá, Florian Kärcher, Birger Haarbrandt, Manuel Prinz, Michael Marschollek, Roland Eils
2023 — conf
Machine Learning for Medical Data Integration.
MIE
Armin Müller, Lara-Sophie Christmann, Severin Kohler, Roland Eils, Fabian Prasser
2023 J jnl
Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards.
SN Comput. Sci.
Matthieu-P. Schapranow, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils
2022 — conf
The COVID-19 Data Exchange Platform of the German University Medicine.
MIE
Hans-Ulrich Prokosch, Thomas Bahls, Martin Bialke, Jürgen Eils, Christian Fegeler, Julian Gründner, Birger Haarbrandt, Christopher Hampf, Wolfgang Hoffmann, Hauke Hund, Marvin O. Kampf, Lorenz A. Kapsner, Piotr Kasprzak, Oliver Kohlbacher, Dagmar Krefting, Jonathan Mang, Michael Marschollek, Sebastian Mate, Armin Müller, Fabian Prasser, Julian Sass, Sebastian C. Semler, Holger Stenzhorn, Sylvia Thun, Sven Zenker, Roland Eils
2021 — conf
An Engineering Approach Towards Multi-site Virtual Molecular Tumor Board Software.
IHAW
Richard Henkenjohann, Benjamin Bergner, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils, Matthieu-P. Schapranow
2021 J jnl
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases.
Briefings Bioinform.
Gerhard Mayer, Wolfgang Müller, Karin Schork, Julian Uszkoreit, Andreas Weidemann, Ulrike Wittig, Maja Rey, Christian Quast, Janine Felden, Frank Oliver Glöckner, Matthias Lange, Daniel Arend, Sebastian Beier, Astrid Junker, Uwe Scholz, Danuta Schüler, Hans A. Kestler, Daniel Wibberg, Alfred Pühler, Sven Twardziok, Jürgen Eils, Roland Eils, Steve Hoffmann, Martin Eisenacher, Michael Turewicz
2021 J jnl
Knowledge bases and software support for variant interpretation in precision oncology.
Briefings Bioinform.
Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow
2021 J jnl
Knowledge bases and software support for variant interpretation in precision oncology.
Briefings Bioinform.
Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow
2020 J jnl
Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders.
Nat. Mach. Intell.
Soeren Lukassen, Foo Wei Ten, Lukás Adam, Roland Eils, Christian Conrad
2020 A conf
Membership Inference Against DNA Methylation Databases.
EuroS&P
Inken Hagestedt, Mathias Humbert, Pascal Berrang, Irina Lehmann, Roland Eils, Michael Backes, Yang Zhang
2020 J jnl
The evolutionary history of 2,658 cancers.
Nat.
Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo
2020 — conf
The openEHR Genomics Project.
MIE
Cecilia Mascia, Francesca Frexia, Paolo Uva, Gianluigi Zanetti, Luca Pireddu, Gideon Giacomelli, Christina Jaeger-Schmidt, Aurelie Tomczak, Simon Schumacher, Florian Kraecher, Roland Eils, Silje Ljosland Bakke, Heather Leslie
2019 J jnl
Leveraging implicit knowledge in neural networks for functional dissection and engineering of proteins.
Nat. Mach. Intell.
Julius Upmeier zu Belzen, Thore Bürgel, Stefan Holderbach, Felix Bubeck, Lukás Adam, Catharina Gandor, Marita Klein, Jan Mathony, Pauline Pfuderer, Lukas Platz, Moritz Przybilla, Max Schwendemann, Daniel Heid, Mareike Daniela Hoffmann, Michael Jendrusch, Carolin Schmelas, Max Waldhauer, Irina Lehmann, Dominik Niopek, Roland Eils
2019 J jnl
Publisher Correction: Leveraging implicit knowledge in neural networks for functional dissection and engineering of proteins.
Nat. Mach. Intell.
Julius Upmeier zu Belzen, Thore Bürgel, Stefan Holderbach, Felix Bubeck, Lukás Adam, Catharina Gandor, Marita Klein, Jan Mathony, Pauline Pfuderer, Lukas Platz, Moritz Przybilla, Max Schwendemann, Daniel Heid, Mareike Daniela Hoffmann, Michael Jendrusch, Carolin Schmelas, Max Waldhauer, Irina Lehmann, Dominik Niopek, Roland Eils
2018 J jnl
BioModels: expanding horizons to include more modelling approaches and formats.
Nucleic Acids Res.
Mihai Glont, Tung V. N. Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M. Wimalaratne, Varun B. Kothamachu, Nicolas Rodriguez, Maciej J. Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S. Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, Henning Hermjakob
2018 A conf
Dissecting Privacy Risks in Biomedical Data.
EuroS&P
Pascal Berrang, Mathias Humbert, Yang Zhang, Irina Lehmann, Roland Eils, Michael Backes
2018 — conf
Evaluating local features in high-resolution 3D-PLI data.
ISBI
Sharib Ali, Markus Axer, Katrin Amunts, Roland Eils, Karl Rohr
2018 J jnl
Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution.
NeuroImage
Sharib Ali, Stefan Wörz, Katrin Amunts, Roland Eils, Markus Axer, Karl Rohr
2018 — conf
Scale-bundle spline-based non-rigid registration for handling fissures.
ISBI
Sharib Ali, Katrin Amunts, Roland Eils, Markus Axer, Karl Rohr
2018 J jnl
Web-based design and analysis tools for CRISPR base editing.
BMC Bioinform.
Gue-Ho Hwang, Jeongbin Park, Kayeong Lim, Sunghyun Kim, Jihyeon Yu, Eunchong Yu, Sang-Tae Kim, Roland Eils, Jin-soo Kim, Sangsu Bae
2017 J jnl
Correlated receptor transport processes buffer single-cell heterogeneity.
PLoS Comput. Biol.
Stefan M. Kallenberger, Anne L. Unger, Stefan Legewie, Konstantinos Lymperopoulos, Ursula Klingmüller, Roland Eils, Dirk-Peter Herten
2017 — conf
Elastic registration of high-resolution 3D PLI data of the human brain.
ISBI
Sharib Ali, Karl Rohr, Markus Axer, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Stefan Wörz
2017 A* conf
Identifying Personal DNA Methylation Profiles by Genotype Inference.
IEEE Symposium on Security and Privacy
Michael Backes, Pascal Berrang, Matthias Bieg, Roland Eils, Carl Herrmann, Mathias Humbert, Irina Lehmann
2017 — conf
Registration of ultra-high resolution 3D PLI data of human brain sections to their corresponding high-resolution counterpart.
ISBI
Sharib Ali, Karl Rohr, Markus Axer, Katrin Amunts, Roland Eils, Stefan Wörz
2017 — conf
Spline-Based Multimodal Image Registration of 3D PLI Data of the Human Brain.
Bildverarbeitung für die Medizin
Sharib Ali, Karl Rohr, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Markus Axer, Stefan Wörz
2016 J jnl
A comprehensive comparison of tools for differential ChIP-seq analysis.
Briefings Bioinform.
Sebastian Steinhauser, Nils Kurzawa, Roland Eils, Carl Herrmann
2016 J jnl
Active medulloblastoma enhancers reveal subgroup-specific cellular origins.
Nat.
Charles Y. Lin, Serap Erkek, Yiai Tong, Linlin Yin, Alexander J. Federation, Marc Zapatka, Parthiv Haldipur, Daisuke Kawauchi, Thomas Risch, Hans-Jörg Warnatz, Barbara C. Worst, Bensheng Ju, Brent A. Orr, Rhamy Zeid, Donald R. Polaski, Maia Segura-Wang, Sebastian M. Waszak, David T. W. Jones, Marcel Kool, Volker Hovestadt, Ivo Buchhalter, Laura Sieber, Pascal Johann, Lukas Chavez, Stefan Gröschel, Marina Ryzhova, Andrey Korshunov, Wenbiao Chen, Victor V. Chizhikov, Kathleen J. Millen, Vyacheslav Amstislavskiy, Hans Lehrach, Marie-Laure Yaspo, Roland Eils, Peter Lichter, Jan O. Korbel, Stefan M. Pfister, James E. Bradner, Paul A. Northcott
2016 J jnl
Complex heatmaps reveal patterns and correlations in multidimensional genomic data.
Bioinform.
Zuguang Gu, Roland Eils, Matthias Schlesner
2016 J jnl
HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.
Bioinform.
Zuguang Gu, Roland Eils, Matthias Schlesner
2016 J jnl
gtrellis: an R/Bioconductor package for making genome-level Trellis graphics.
BMC Bioinform.
Zuguang Gu, Roland Eils, Matthias Schlesner
2015 J jnl
MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences.
Nucleic Acids Res.
Nicholas Nolte, Nils Kurzawa, Roland Eils, Carl Herrmann
2015 J jnl
Non-rigid multi-frame registration of cell nuclei in live cell fluorescence microscopy image data.
Medical Image Anal.
Marco Tektonidis, Il-Han Kim, Yi-Chun Chen, Roland Eils, David L. Spector, Karl Rohr
2015 J jnl
On the role of spatial phase and phase correlation in vision, illusion, and cognition.
Frontiers Comput. Neurosci.
Evgeny Gladilin, Roland Eils
2015 J jnl
Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association.
IEEE Trans. Image Process.
Astha Jaiswal, William J. Godinez, Roland Eils, Maik Jörg Lehmann, Karl Rohr
2014 J jnl
Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen.
PLoS Comput. Biol.
Apichat Suratanee, Martin H. Schaefer, Matthew J. Betts, Zita Soons, Heiko A. Mannsperger, Nathalie Harder, Marcus Oswald, Markus Gipp, Ellen Ramminger, Guillermo Marcus Martinez, Reinhard Männer, Karl Rohr, Erich E. Wanker, Robert B. Russell, Miguel A. Andrade-Navarro, Roland Eils, Rainer König
2014 J jnl
Data-Derived Modeling Characterizes Plasticity of MAPK Signaling in Melanoma.
PLoS Comput. Biol.
Marti Bernardo-Faura, Stefan Massen, Christine S. Falk, Nathan R. Brady, Roland Eils
2014 J jnl
Estimating the activity of transcription factors by the effect on their target genes.
Bioinform.
Theresa Schacht, Marcus Oswald, Roland Eils, Stefan B. Eichmüller, Rainer König
2014 J jnl
Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling.
BMC Syst. Biol.
Rosario M. Piro, Stefan Wiesberg, Gunnar Schramm, Nico Rebel, Marcus Oswald, Roland Eils, Gerhard Reinelt, Rainer König
2013 J jnl
Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinities.
Bioinform.
Rosario M. Piro, Ivan Molineris, Ferdinando Di Cunto, Roland Eils, Rainer König
2013 J jnl
Mining Quasi-Bicliques from HIV-1-Human Protein Interaction Network: A Multiobjective Biclustering Approach.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ujjwal Maulik, Anirban Mukhopadhyay, Malay Bhattacharyya, Lars Kaderali, Benedikt Brors, Sanghamitra Bandyopadhyay, Roland Eils
2013 J jnl
SplicingCompass: differential splicing detection using RNA-Seq data.
Bioinform.
Moritz Aschoff, Agnes Hotz-Wagenblatt, Karl-Heinz Glatting, Matthias Fischer, Roland Eils, Rainer König
2012 — conf
Cell Tracking for Automatic Migration and Proliferation Analysis in High-Throughput Screens.
Bildverarbeitung für die Medizin
Nathalie Harder, Richa Batra, Sina Gogolin, Nicolle Diessl, Roland Eils, Frank Westermann, Rainer König, Karl Rohr
2012 J jnl
Identifying Virus-Cell Fusion in Two-Channel Fluorescence Microscopy Image Sequences Based on a Layered Probabilistic Approach.
IEEE Trans. Medical Imaging
William J. Godinez, Marko Lampe, Peter Koch, Roland Eils, Barbara Müller, Karl Rohr
2012 — conf
Tracking Virus Particles in Microscopy Images Using Multi-Frame Association.
Bildverarbeitung für die Medizin
Astha Jaiswal, William J. Godinez, Roland Eils, Maik Jörg Lehmann, Karl Rohr
2012 — conf
Tracking virus particles in fluorescence microscopy images using two-step multi-frame association.
ISBI
Astha Jaiswal, William J. Godinez, Roland Eils, Maik Jörg Lehmann, Karl Rohr
2011 — conf
3D Segmentation and Quantification of Mouse Embryonic Stem Cells in Fluorescence Microscopy Images.
Bildverarbeitung für die Medizin
Nathalie Harder, Megan Bodnar, Roland Eils, David L. Spector, Karl Rohr
2011 — conf
3D segmentation and quantification of mouse embryonic stem cells in fluorescence microscopy images.
ISBI
Nathalie Harder, Megan Bodnar, Roland Eils, David L. Spector, Karl Rohr
2011 J jnl
Nonrigid Registration of 2-D and 3-D Dynamic Cell Nuclei Images for Improved Classification of Subcellular Particle Motion.
IEEE Trans. Image Process.
Il-Han Kim, Yi-Chun Chen, David L. Spector, Roland Eils, Karl Rohr
2011 J jnl
Normalizing for individual cell population context in the analysis of high-content cellular screens.
BMC Bioinform.
Bettina Knapp, Ilka Rebhan, Anil Kumar, Petr Matula, Narsis Aftab Kiani, Marco Binder, Holger Erfle, Karl Rohr, Roland Eils, Ralf Bartenschlager, Lars Kaderali
2011 — conf
Quantification of frap experiments in live cell image sequences by combining segmentation and registration.
ISBI
Il-Han Kim, Catharina Cadmus, Andrea C. Pfeifer, Ursula Klingmüller, Roland Eils, Karl Rohr
2011 J jnl
RIP: the regulatory interaction predictor - a machine learning-based approach for predicting target genes of transcription factors.
Bioinform.
Tobias Bauer, Roland Eils, Rainer König
2011 C conf
Reconstructing evolutionary modular networks from time series data.
FUSION
Navid Bazzazzadeh, Benedikt Brors, Roland Eils
2011 A* conf
Reconstructing the Stochastic Evolution Diagram of Dynamic Complex Systems.
AAAI
Navid Bazzazzadeh, Benedikt Brors, Roland Eils
2011 — conf
Tracking multiple particles in fluorescence microscopy images via probabilistic data association.
ISBI
William J. Godinez, Marko Lampe, Roland Eils, Barbara Müller, Karl Rohr
2010 — conf
Automatic Analysis of Live Cell Image Sequences to determine Temporal Mitotic Phenotypes.
Bildverarbeitung für die Medizin
Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Annelie Wünsche, Jan Ellenberg, Roland Eils, Karl Rohr
2010 J jnl
Bayesian statistical modelling of human protein interaction network incorporating protein disorder information.
BMC Bioinform.
Svetlana Bulashevska, Alla Bulashevska, Roland Eils
2010 J jnl
Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images.
Bioinform.
Apichat Suratanee, Ilka Rebhan, Petr Matula, Anil Kumar, Lars Kaderali, Karl Rohr, Ralf Bartenschlager, Roland Eils, Rainer König
2010 J jnl
Identifying essential genes in bacterial metabolic networks with machine learning methods.
BMC Syst. Biol.
Kitiporn Plaimas, Roland Eils, Rainer König
2010 J jnl
PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways.
Bioinform.
Gunnar Schramm, Stefan Wiesberg, Nicolle Diessl, Anna-Lena Kranz, Vitalia Sagulenko, Marcus Oswald, Gerhard Reinelt, Frank Westermann, Roland Eils, Rainer König
2009 — conf
Analyzing the regulation of metabolic pathways in human breast cancer.
LWA
Eva-Maria Surmann, Gunnar Schramm, Stefan Wiesberg, Marcus Oswald, Gerhard Reinelt, Roland Eils, Rainer König
2009 B conf
Detection of non-uniform multi-body motion in image time-series using saccades-enhanced phase correlation.
Image Processing
Evgeny Gladilin, Roland Eils
2009 J jnl
Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences.
Medical Image Anal.
William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr
2009 — conf
Evaluation of Approaches for Tracking Virus Particles in Fluorescence Microscopy Images.
Bildverarbeitung für die Medizin
William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr
2009 — conf
Identifying Fusion Events in Fluorescence Microscopy Images.
ISBI
William J. Godinez, Marko Lampe, Stefan Wörz, Roland Eils, Barbara Müller, Karl Rohr
2009 J jnl
Optimal Experimental Design for Parameter Estimation of a Cell Signaling Model.
PLoS Comput. Biol.
Samuel Bandara, Johannes P. Schlöder, Roland Eils, Hans Georg Bock, Tobias Meyer
2009 J jnl
Prediction of small molecule binding property of protein domains with Bayesian classifiers based on Markov chains.
Comput. Biol. Chem.
Alla Bulashevska, Martin Stein, David Jackson, Roland Eils
2009 J jnl
RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens.
Bioinform.
Nora Rieber, Bettina Knapp, Roland Eils, Lars Kaderali
2008 J jnl
An ultrasensitive sorting mechanism for EGF Receptor Endocytosis.
BMC Syst. Biol.
Hannah Schmidt-Glenewinkel, Ivayla Vacheva, Daniela Hoeller, Ivan Dikic, Roland Eils
2008 — conf
Automated Analysis of siRNA Screens of Virus Infected Cells Based on Immunofluorescence Microscopy.
Bildverarbeitung für die Medizin
Petr Matula, Anil Kumar, Ilka Wörz, Nathalie Harder, Holger Erfle, Ralf Bartenschlager, Roland Eils, Karl Rohr
2008 J jnl
Machine learning based analyses on metabolic networks supports high-throughput knockout screens.
BMC Syst. Biol.
Kitiporn Plaimas, Jan-Phillip Mallm, Marcus Oswald, Fabian Svara, Victor Sourjik, Roland Eils, Rainer König
2008 B conf
Nonlinear elastic model for image registration and soft tissue simulation based on piecewise St. Venant-Kirchhoff material approximation.
Image Processing
Evgeny Gladilin, Roland Eils
2008 J jnl
Nonrigid Registration of 3-D Multichannel Microscopy Images of Cell Nuclei.
IEEE Trans. Image Process.
Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Patricia Le Baccon, Edith Heard, Roland Eils, Karl Rohr
2008 — conf
Probabilistic Tracking of Virus Particles in Fluorescence Microscopy Image Sequences.
Bildverarbeitung für die Medizin
William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr
2008 — conf
Probabilistic tracking of virus particles in fluorescence microscopy images.
ISBI
William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr
2008 J jnl
Systems Biology and Artificial Life: Towards Predictive Modeling of Biological Systems.
Artif. Life
Jan T. Kim, Roland Eils
2007 — conf
Analyzing the Variability of the 3D Structure of Chromatin Fiber Using Statistical Shape Theory.
DAGM-Symposium
Siwei Yang, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr
2007 B conf
Compensation of global movement for improved tracking of cells in time-lapse confocal microscopy image sequences.
Image Processing
Il-Han Kim, William J. Godinez, Nathalie Harder, Felipe Mora-Bermúdez, Jan Ellenberg, Roland Eils, Karl Rohr
2007 — conf
Determination of Mitotic Delays in 3D Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine.
Bildverarbeitung für die Medizin
Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr
2007 — conf
Determination of Mitotic Delays in 3d Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine.
ISBI
Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr
2007 C conf
Geometrical probability approach for analysis of 3D chromatin structure in interphase cell nuclei.
CIBCB
Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils
2007 — conf
Integrating Genomic and Transcriptomic Data into Graph Based Approaches for Defining Essential Reactions in the Metabolic Network of Escherichia Coli.
LWA
Kitiporn Plaimas, Marcus Oswald, Roland Eils, Rainer König
2007 B conf
Model-based segmentation and quantification of fluorescent bacteria in 3D microscopy live cell images.
Image Processing
Stefan Wörz, Constantin Kappel, Roland Eils, Karl Rohr
2007 B conf
Motion detection and pattern tracking in microscopical images using phase correlation approach.
Image Processing
Evgeny Gladilin, Constantin Kappel, Roland Eils
2007 — conf
Non-Rigid Temporal Registration of 2d and 3d Multi-Channel Microscopy Image Sequences of Human Cells.
ISBI
Il-Han Kim, Siwei Yang, Patricia Le Baccon, Edith Heard, Yi-Chun Chen, David L. Spector, Constantin Kappel, Roland Eils, Karl Rohr
2007 — conf
Non-rigid Temporal Alignment of 2D and 3D Multi-channel Microscopy Image Sequences of Human Cells.
Bildverarbeitung für die Medizin
Il-Han Kim, Siwei Yang, Patricia Le Baccon, Edith Heard, Constantin Kappel, Roland Eils, Karl Rohr
2007 — conf
On Validation of Non-physical Techniques for Elastic Image Registration.
Bildverarbeitung für die Medizin
Evgeny Gladilin, Karl Rohr, Roland Eils
2007 — conf
Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei.
BIRD
Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils
2007 — conf
Tracking of Virus Particles in Time-Lapse Fluorescence Microscopy Image Sequences.
Bildverarbeitung für die Medizin
William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr
2007 — conf
Tracking of Virus Particles in Time-Lapse Fluorescence Microscopy Image Sequences.
ISBI
William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr
2007 J jnl
Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of
BMC Bioinform.
Gunnar Schramm, Marc Zapatka, Roland Eils, Rainer König
2007 — conf
Variability Analysis of the Large-Scale Structure of Interphase Chromatin Fiber Based on Statistical Shape Theory.
MDA
Siwei Yang, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr
2006 — conf
3D Formnormalisierung von Zellkernen mit Hilfe einer elastischen Kugelabbildung.
Bildverarbeitung für die Medizin
Evgeny Gladilin, Roland Eils, Karl Rohr
2006 — conf
Analyzing motion and deformation of the cell nucleus for studying co-localizations of nuclear structures.
ISBI
Julian Mattes, Janna Nawroth, Petra Boukamp, Roland Eils, Karin M. Greulich-Bode
2006 J jnl
Argonaute - a database for gene regulation by mammalian microRNAs.
Nucleic Acids Res.
Priyanka Shahi, Serguei Loukianiouk, Andreas Bohne-Lang, Marc Kenzelmann, Stefan Küffer, Sabine Maertens, Roland Eils, Hermann-Josef Gröne, Norbert Gretz, Benedikt Brors
2006 — conf
Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells.
Bildverarbeitung für die Medizin
Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr
2006 — conf
Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image Sequences.
MICCAI (1)
Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr
2006 — conf
Automated recognition of mitotic patterns in fluorescence microscopy images of human cells.
ISBI
Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr
2006 J jnl
Computational Systems Biology Platforms (Computergestützte Systembiologieplattformen).
it Inf. Technol.
Ivayla Vacheva, Roland Eils
2006 J jnl
Discovering functional gene expression patterns in the metabolic network of
BMC Bioinform.
Rainer König, Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils
2006 — conf
Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens.
CVPR (1)
Vassili Kovalev, Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr
2006 J jnl
GOPET: A tool for automated predictions of Gene Ontology terms.
BMC Bioinform.
Arunachalam Vinayagam, Coral del Val, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai, Rainer König
2006 J jnl
Group testing for pathway analysis improves comparability of different microarray datasets.
Bioinform.
Theodora Manoli, Norbert Gretz, Hermann-Josef Gröne, Marc Kenzelmann, Roland Eils, Benedikt Brors
2006 — conf
Non-rigid Registration of 3D Microscopy Images for the Normalization of Different Cell Nuclei.
Bildverarbeitung für die Medizin
Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Roland Eils, Karl Rohr
2006 — conf
Non-rigid Registration of 3D Multi-channel Microscopy Images of Cell Nuclei.
MICCAI (1)
Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Patricia Le Baccon, Edith Heard, Roland Eils, Karl Rohr
2006 — conf
Pattern recognition of gene expression data on biochemical networks with simple wavelet transforms.
LWA
Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils, Rainer König
2006 J jnl
Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains.
BMC Bioinform.
Alla Bulashevska, Roland Eils
2006 J jnl
Systems Biology and Information Technology (Systembiologie und Informationstechnologie.
it Inf. Technol.
Roland Eils, Leo Neumann
2006 B conf
Topological analysis of 3D cell nuclei using finite element template-based spherical mapping.
Image Processing
Evgeny Gladilin, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr
2006 J jnl
Tropical - parameter estimation and simulation of reaction-diffusion models based on spatio-temporal microscopy images.
Bioinform.
Markus Ulrich, Constantin Kappel, Joël Beaudouin, Stefan Hezel, Jochen Ulrich, Roland Eils
2005 J jnl
CGH-Profiler: Data mining based on genomic aberration profiles.
BMC Bioinform.
Falk Schubert, Bernhard Tausch, Stefan Joos, Roland Eils
2005 J jnl
Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes.
BMC Bioinform.
Patrick Warnat, Roland Eils, Benedikt Brors
2005 J jnl
Inferring genetic regulatory logic from expression data.
Bioinform.
Svetlana Bulashevska, Roland Eils
2004 J jnl
Applying Support Vector Machines for Gene ontology based gene function prediction.
BMC Bioinform.
Arunachalam Vinayagam, Rainer König, Jutta Moormann, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai
2004 — conf
Assessing The Similarity of Spatial Configurations Using Distance Differences and Bending Energy: Application To Chromosomal Interphase Arrangements In HeLa Cell Clones.
ISBI
Juntao Gao, Roland Eils, Daniela Köhler, Irina Solovei, Thomas Cremer, Julian Mattes
2004 J jnl
Gene expression analysis on biochemical networks using the Potts spin model.
Bioinform.
Rainer König, Roland Eils
2004 — conf
General Stochastic Hybrid Method for the Simulation of Chemical Reaction Processes in Cells.
CMSB
Martin Bentele, Roland Eils
2004 — conf
Spatial Modeling and Simulation of Diffusion in Nuclei of Living Cells.
CMSB
Dietmar Volz, Martin Eigel, Chaitanya A. Athale, Peter Bastian, Harald Hermann, Constantin Kappel, Roland Eils
2003 — conf
Gene expression analysis on biochemical networks with the potts spin model.
German Conference on Bioinformatics
Rainer König, Roland Eils
2003 — conf
Understanding the classification of tumors with a support-vector-machine: A case-based explanation scheme.
German Conference on Bioinformatics
Falk Schubert, Jasmin Müller, Björn Fritz, Peter Lichter, Roland Eils
2002 — conf
Machine Learning Approaches for Deciphering Complex Pathomechanisms in Cancer.
GI Jahrestagung (Ergänzungsband)
Roland Eils
2002 — conf
Modelling of Information Flows in Cells.
ESM
Marco Weismueller, Rainer König, Roland Eils
2002 B conf
Shape-adapted motion model based on thin-plate splines and point clustering for point set registration.
Image Processing
Julian Mattes, Johannes Fieres, Roland Eils
2001 — conf
A Point Set Registration Algorithm Using a Motion Model Based on Thin-Plate Splines and Point Clustering.
DAGM-Symposium
Johannes Fieres, Julian Mattes, Roland Eils
2001 A conf
An Active Contour Model for Segmentation Based on Cubic B-splines and Gradient Vector Flow.
MICCAI
Matthias Gebhard, Julian Mattes, Roland Eils
2001 A conf
New Tools for Visualization and Quantification in Dynamic Processes: Application to the Nuclear Envelope Dynamics During Mitosis.
MICCAI
Julian Mattes, Johannes Fieres, Joël Beaudouin, Daniel Gerlich, Jan Ellenberg, Roland Eils
1996 — conf
3D-Bildfolgen zur Auflösungsverbesserung in der Fluoreszenzmikroskopie.
DAGM-Symposium
Kurt Sätzler, Cornelius Cremer, Roland Eils
1996 — conf
Modellgestützte Segmentierung von Replikationsdomänen in dreidimensionalen konfokalen Mikroskopiebildern.
DAGM-Symposium
Harald Bornfleth, Daniele Zink, Kurt Sätzler, Roland Eils, Christoph Cremer