Rohit Singh

26 papers A* 3B 3C 1Misc 5Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Reverse Distillation: Consistently Scaling Protein Language Model Representations.
CoRR
Darius Catrina, Christian Bepler, Samuel Sledzieski, Rohit Singh
2025 B conf
Decoding the Functional Interactome of Non-model Organisms with PHILHARMONIC.
RECOMB
Samuel Sledzieski, Charlotte Versavel, Rohit Singh, Faith Ocitti, Kapil Devkota, Lokender Kumar, Polina Shpilker, Liza Roger, Jinkyu Yang, Nastassja Lewinski, Hollie Putnam, Bonnie Berger, Judith Klein-Seetharaman, Lenore Cowen
2025 B conf
Learning a CoNCISE Language for Small-Molecule Binding.
RECOMB
Mert Erden, Kapil Devkota, Lia Varghese, Lenore Cowen, Rohit Singh
2023 J jnl
Causally-guided Regularization of Graph Attention Improves Generalizability.
Trans. Mach. Learn. Res.
Alexander P. Wu, Thomas Markovich, Bonnie Berger, Nils Yannick Hammerla, Rohit Singh
2023 J jnl
TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions.
Bioinform.
Samuel Sledzieski, Kapil Devkota, Rohit Singh, Lenore Cowen, Bonnie Berger
2022 J jnl
Causally-guided Regularization of Graph Attention Improves Generalizability.
CoRR
Alexander P. Wu, Thomas Markovich, Bonnie Berger, Nils Hammerla, Rohit Singh
2022 A* conf
Granger causal inference on DAGs identifies genomic loci regulating transcription.
ICLR
Alexander P. Wu, Rohit Singh, Bonnie Berger
2022 J jnl
Granger causal inference on DAGs identifies genomic loci regulating transcription.
CoRR
Rohit Singh, Alexander P. Wu, Bonnie Berger
2022 J jnl
Topsy-Turvy: integrating a global view into sequence-based PPI prediction.
Bioinform.
Rohit Singh, Kapil Devkota, Samuel Sledzieski, Bonnie Berger, Lenore Cowen
2012 — —
Algorithms for the analysis of protein interaction networks.
Rohit Singh
2011 J jnl
IsoBase: a database of functionally related proteins across PPI networks.
Nucleic Acids Res.
Daniel Park, Rohit Singh, Michael Baym, Chung-Shou Liao, Bonnie Berger
2011 J jnl
Sparse estimation for structural variability.
Algorithms Mol. Biol.
Raghavendra Hosur, Rohit Singh, Bonnie Berger
2010 C conf
Sparse Estimation for Structural Variability.
WABI
Raghavendra Hosur, Rohit Singh, Bonnie Berger
2010 J jnl
Struct2Net: a web service to predict protein-protein interactions using a structure-based approach.
Nucleic Acids Res.
Rohit Singh, Daniel Park, Jinbo Xu, Raghavendra Hosur, Bonnie Berger
2009 J jnl
IsoRankN: spectral methods for global alignment of multiple protein networks.
Bioinform.
Chung-Shou Liao, Kanghao Lu, Michael Baym, Rohit Singh, Bonnie Berger
2008 Misc conf
Global Alignment of Multiple Protein Interaction Networks.
Pacific Symposium on Biocomputing
Rohit Singh, Jinbo Xu, Bonnie Berger
2008 J jnl
Global alignment of multiple protein interaction networks with application to functional orthology detection.
Proc. Natl. Acad. Sci. USA
Rohit Singh, Jinbo Xu, Bonnie Berger
2008 A* conf
Graph algorithms for biological systems analysis.
SODA
Bonnie Berger, Rohit Singh, Jinbo Xu
2007 B conf
Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology.
RECOMB
Rohit Singh, Jinbo Xu, Bonnie Berger
2007 J jnl
Predicting and Annotating Catalytic Residues: An Information Theoretic Approach.
J. Comput. Biol.
Beckett W. Sterner, Rohit Singh, Bonnie Berger
2007 Misc conf
Probabilistic Modeling of Systematic Errors in Two-Hybrid Experiments.
Pacific Symposium on Biocomputing
David A. Sontag, Rohit Singh, Bonnie Berger
2006 Misc conf
Struct2Net: Integrating Structure into Protein-Protein Interaction Prediction.
Pacific Symposium on Biocomputing
Rohit Singh, Jinbo Xu, Bonnie Berger
2005 A* conf
Active learning for sampling in time-series experiments with application to gene expression analysis.
ICML
Rohit Singh, Nathan P. Palmer, David K. Gifford, Bonnie Berger, Ziv Bar-Joseph
2005 Misc conf
ChainTweak: Sampling from the Neighbourhood of a Protein Conformation.
Pacific Symposium on Biocomputing
Rohit Singh, Bonnie Berger
2003 Misc conf
Identifying Structural Motifs in Proteins.
Pacific Symposium on Biocomputing
Rohit Singh, Mitul Saha
1999 — conf
Multi-Dimensional Interval Algebra with Symmetry for Describing Block Layouts.
GREC
Ankur Lahoti, Rohit Singh, Amitabha Mukerjee