Robin D. Dowell

14 papers B 1Misc 1Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Internal and external normalization of nascent RNA sequencing run-on experiments.
BMC Bioinform.
Zachary L. Maas, Robin D. Dowell
2020 Misc conf
Two-stage ML Classifier for Identifying Host Protein Targets of the Dengue Protease.
PSB
Jacob T. Stanley, Alison R. Gilchrist, Alex C. Stabell, Mary A. Allen, Sara L. Sawyer, Robin D. Dowell
2017 J jnl
A generative model for the behavior of RNA polymerase.
Bioinform.
Joseph Azofeifa, Robin D. Dowell
2017 J jnl
An Annotation Agnostic Algorithm for Detecting Nascent RNA Transcripts in GRO-Seq.
IEEE ACM Trans. Comput. Biol. Bioinform.
Joseph Azofeifa, Mary A. Allen, Manuel E. Lladser, Robin D. Dowell
2017 J jnl
Model based heritability scores for high-throughput sequencing data.
BMC Bioinform.
Pratyaydipta Rudra, W. Jenny Shi, Brian Vestal, Pamela H. Russell, Aaron Odell, Robin D. Dowell, Richard Radcliffe, Laura M. Saba, Katerina J. Kechris
2016 J jnl
A Modeling Framework for Generation of Positional and Temporal Simulations of Transcriptional Regulation.
IEEE ACM Trans. Comput. Biol. Bioinform.
David A. Knox, Robin D. Dowell
2014 — conf
FStitch: a fast and simple algorithm for detecting nascent RNA transcripts.
BCB
Joseph Azofeifa, Mary A. Allen, Manuel E. Lladser, Robin D. Dowell
2014 — conf
Inferring ancestry in mouse genomes using a hidden Markov model.
BCB
Daniel Malmer, Phillip Andrew Richmond, Aaron Odell, Richard Radcliffe, Robin D. Dowell
2011 J jnl
Discovering Regulatory Overlapping RNA Transcripts.
J. Comput. Biol.
Timothy Danford, Robin D. Dowell, Sudeep Agarwala, Paula Grisafi, Gerald Fink, David K. Gifford
2010 B conf
Discovering Regulatory Overlapping RNA Transcripts.
RECOMB
Timothy Danford, Robin D. Dowell, Sudeep Agarwala, Paula Grisafi, Gerald Fink, David K. Gifford
2007 J jnl
Automated Discovery of Functional Generality of Human Gene Expression Programs.
PLoS Comput. Biol.
Georg K. Gerber, Robin D. Dowell, Tommi S. Jaakkola, David K. Gifford
2006 J jnl
Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints.
BMC Bioinform.
Robin D. Dowell, Sean R. Eddy
2004 J jnl
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction.
BMC Bioinform.
Robin D. Dowell, Sean R. Eddy
2001 J jnl
The Distributed Annotation System.
BMC Bioinform.
Robin D. Dowell, Rodney M. Jokerst, Allen Day, Sean R. Eddy, Lincoln Stein