Robin B. Gasser

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2025 J jnl
MUSIC-GCN: A Novel Multi-Tasking Pipeline for Analyzing Single-Cell Transcriptomic Data Using Residual Graph Convolution Network.
IEEE Trans. Comput. Biol. Bioinform.
Yan Liu, Guo Wei, Jia-Shun Wu, Chen Li, He Yan, Long-Chen Shen, Robin B. Gasser, Jiangning Song, Dijun Chen, Dong-Jun Yu
2025 J jnl
SCREEN: A Graph-based Contrastive Learning Tool to Infer Catalytic Residues and Assess Enzyme Mutations.
Genom. Proteom. Bioinform.
Tong Pan, Yue Bi, Xiaoyu Wang, Ying Zhang, Geoffrey I. Webb, Robin B. Gasser, Lukasz A. Kurgan, Jiangning Song
2025 J jnl
scRCA: A Siamese network-based pipeline for annotating cell types using noisy single-cell RNA-seq reference data.
Comput. Biol. Medicine
Yan Liu, Chen Li, Long-Chen Shen, He Yan, Guo Wei, Robin B. Gasser, Xiaohua Hu, Jiangning Song, Dong-Jun Yu
2024 J jnl
'Bingo' - a large language model- and graph neural network-based workflow for the prediction of essential genes from protein data.
Briefings Bioinform.
Jiani Ma, Jiangning Song, Neil D. Young, Bill C. H. Chang, Pasi K. Korhonen, Tulio L. Campos, Hui Liu, Robin B. Gasser
2023 J jnl
Deep domain adversarial neural network for the deconvolution of cell type mixtures in tissue proteome profiling.
Nat. Mac. Intell.
Fang Wang, Fan Yang, Longkai Huang, Wei Li, Jiangning Song, Robin B. Gasser, Ruedi Aebersold, Guohua Wang, Jianhua Yao
2023 J jnl
Digerati - A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins.
Comput. Biol. Medicine
Fuyi Li, Xudong Guo, Yue Bi, Runchang Jia, Miranda E. Pitt, Shirui Pan, Shuqin Li, Robin B. Gasser, Lachlan J. M. Coin, Jiangning Song
2023 J jnl
PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships.
Bioinform.
Tong Pan, Chen Li, Yue Bi, Zhikang Wang, Robin B. Gasser, Anthony W. Purcell, Tatsuya Akutsu, Geoffrey I. Webb, Seiya Imoto, Jiangning Song
2023 J jnl
TripletCell: a deep metric learning framework for accurate annotation of cell types at the single-cell level.
Briefings Bioinform.
Yan Liu, Guo Wei, Chen Li, Long-Chen Shen, Robin B. Gasser, Jiangning Song, Dijun Chen, Dong-Jun Yu
2022 J jnl
DEMoS: a deep learning-based ensemble approach for predicting the molecular subtypes of gastric adenocarcinomas from histopathological images.
Bioinform.
Yanan Wang, Changyuan Hu, Terry Kwok, Christopher A. Bain, Xiangyang Xue, Robin B. Gasser, Geoffrey I. Webb, Alex Boussioutas, Xian Shen, Roger J. Daly, Jiangning Song
2022 J jnl
PROST: AlphaFold2-aware Sequence-Based Predictor to Estimate Protein Stability Changes upon Missense Mutations.
J. Chem. Inf. Model.
Shahid Iqbal, Fang Ge, Fuyi Li, Tatsuya Akutsu, Yuanting Zheng, Robin B. Gasser, Dong-Jun Yu, Geoffrey I. Webb, Jiangning Song
2021 J jnl
OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines.
Nucleic Acids Res.
Sanathoi Gurumayum, Puzi Jiang, Xiaowen Hao, Tulio de Lima Campos, Neil D. Young, Pasi K. Korhonen, Robin B. Gasser, Peer Bork, Xing-Ming Zhao, Lijie He, Wei-Hua Chen
2019 J jnl
DRfit: a Java tool for the analysis of discrete data from multi-well plate assays.
BMC Bioinform.
Andreas Hofmann, Sarah Preston, Megan Cross, H. M. P. Dilrukshi Herath, Anne Simon, Robin B. Gasser
2015 J jnl
A practical Java tool for small-molecule compound appraisal.
J. Cheminformatics
Parisa Amani, Todd Sneyd, Sarah Preston, Neil D. Young, Lyndel Mason, Ulla-Maja Bailey, Jonathan B. Baell, David Camp, Robin B. Gasser, Alain-Dominique Gorse, Paul Taylor, Andreas Hofmann
2013 J jnl
SchistoDB: an updated genome resource for the three key schistosomes of humans.
Nucleic Acids Res.
Adhemar Zerlotini, Eric R. G. R. Aguiar, Fudong Yu, Huayong Xu, Yixue Li, Neil D. Young, Robin B. Gasser, Anna V. Protasio, Matthew Berriman, David S. Roos, Jessica C. Kissinger, Guilherme Oliveira
2012 J jnl
SBAL: a practical tool to generate and edit structure-based amino acid sequence alignments.
Bioinform.
Conan K. Wang, Ursula Broder, Saroja K. Weeratunga, Robin B. Gasser, Alex Loukas, Andreas Hofmann
2012 J jnl
TranSeqAnnotator: large-scale analysis of transcriptomic data.
BMC Bioinform.
Ranjeeta Menon, Gagan Garg, Robin B. Gasser, Shoba Ranganathan
2007 J jnl
A hitchhiker's guide to expressed sequence tag (EST) analysis.
Briefings Bioinform.
Shivashankar H. Nagaraj, Robin B. Gasser, Shoba Ranganathan
2007 J jnl
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.
Nucleic Acids Res.
Shivashankar H. Nagaraj, Nandan Deshpande, Robin B. Gasser, Shoba Ranganathan