Robert M. Stephens

19 papers Journal 18
YearRankTypeTitle / Venue / Authors
2016 J jnl
Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads.
BioData Min.
Ma Liang, Castle Raley, Xin Zheng, Geetha Kutty, Emile Gogineni, Brad T. Sherman, Qiang Sun, Xiongfong Chen, Thomas Skelly, Kristine Jones, Robert M. Stephens, Bin Zhou, William W. Lau, Calvin A. Johnson, Tomozumi Imamichi, Minkang Jiang
2014 J jnl
AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations.
Bioinform.
Hue Vuong, Robert M. Stephens, Natalia Volfovsky
2013 J jnl
Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools.
Nucleic Acids Res.
Regina Z. Cer, Duncan E. Donohue, Uma Mudunuri, Nuri A. Temiz, Michael A. Loss, Nathan J. Starner, Goran N. Halusa, Natalia Volfovsky, Ming Yi, Brian T. Luke, Albino Bacolla, Jack R. Collins, Robert M. Stephens
2013 J jnl
SRAdb: query and use public next-generation sequencing data from within R.
BMC Bioinform.
Yuelin Zhu, Robert M. Stephens, Paul S. Meltzer, Sean R. Davis
2012 J jnl
DAVID-WS: a stateful web service to facilitate gene/protein list analysis.
Bioinform.
Xiaoli Jiao, Brad T. Sherman, Da Wei Huang, Robert M. Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki
2011 J jnl
Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes.
Nucleic Acids Res.
Regina Z. Cer, Kevin H. Bruce, Uma Mudunuri, Ming Yi, Natalia Volfovsky, Brian T. Luke, Albino Bacolla, Jack R. Collins, Robert M. Stephens
2010 J jnl
MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains.
Nucleic Acids Res.
Keiko Akagi, Robert M. Stephens, Jingfeng Li, Evgenji Evdokimov, Michael R. Kuehn, Natalia Volfovsky, David E. Symer
2009 — ch.
Pathway Analysis: Pathway Signatures and Classification.
Statistics and Informatics in Molecular Cancer Research
Ming Yi, Robert M. Stephens
2009 J jnl
Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis.
BMC Bioinform.
Ming Yi, Uma Mudunuri, Anney Che, Robert M. Stephens
2009 J jnl
bioDBnet: the biological database network.
Bioinform.
Uma Mudunuri, Anney Che, Ming Yi, Robert M. Stephens
2008 J jnl
GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus.
Bioinform.
Yuelin Zhu, Sean R. Davis, Robert M. Stephens, Paul S. Meltzer, Yidong Chen
2007 J jnl
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.
Nucleic Acids Res.
Da Wei Huang, Brad T. Sherman, Qina Tan, Joseph Kir, David Liu, David Bryant, Yongjian Guo, Robert M. Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki
2007 J jnl
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.
BMC Bioinform.
Brad T. Sherman, Da Wei Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert M. Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki
2006 J jnl
Transcriptomic response to differentiation induction.
BMC Bioinform.
G. W. Patton, Robert M. Stephens, I. A. Sidorov, X. Xiao, Richard A. Lempicki, Dimiter S. Dimitrov, Robert H. Shoemaker, G. Tudor
2006 J jnl
WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data.
BMC Bioinform.
Ming Yi, Jay D. Horton, Jonathan C. Cohen, Helen H. Hobbs, Robert M. Stephens
2006 J jnl
botXminer: mining biomedical literature with a new web-based application.
Nucleic Acids Res.
Uma Mudunuri, Robert M. Stephens, David Bruining, David Liu, Frank J. Lebeda
2005 J jnl
High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID).
BMC Bioinform.
Barry Zeeberg, Haiying Qin, Sudarshan Narasimhan, Margot Sunshine, Hong Cao, David W. Kane, Mark Reimers, Robert M. Stephens, David Bryant, Stanley K. Burt, Eldad Elnekave, Danielle M. Hari, Thomas A. Wynn, Charlotte Cunningham-Rundles, Donn M. Stewart, David Nelson, John N. Weinstein
2004 J jnl
RTCGD: retroviral tagged cancer gene database.
Nucleic Acids Res.
Keiko Akagi, Takeshi Suzuki, Robert M. Stephens, Nancy A. Jenkins, Neal G. Copeland
2001 J jnl
The RESID Database of protein structure modifications and the NRL-3D Sequence-Structure Database.
Nucleic Acids Res.
John S. Garavelli, Zhenglin Hou, Nagarajan Pattabiraman, Robert M. Stephens