Robert Küffner

21 papers A 1B 1Journal 15Unranked 4
YearRankTypeTitle / Venue / Authors
2017 J jnl
KNIME4NGS: a comprehensive toolbox for next generation sequencing analysis.
Bioinform.
Maximilian Hastreiter, Tim Jeske, Jonathan Hoser, Michael Kluge, Kaarin Ahomaa, Marie-Sophie Friedl, Sebastian J. Kopetzky, Jan-Dominik Quell, Hans-Werner Mewes, Robert Küffner
2015 J jnl
Addressing false discoveries in network inference.
Bioinform.
Tobias Petri, Stefan Altmann, Ludwig Geistlinger, Ralf Zimmer, Robert Küffner
2015 J jnl
DREAMTools: a Python package for scoring collaborative challenges.
F1000Research
Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez
2013 J jnl
A Turing test for artificial expression data.
Bioinform.
Robert Maier, Ralf Zimmer, Robert Küffner
2012 J jnl
Inferring gene regulatory networks by ANOVA.
Bioinform.
Robert Küffner, Tobias Petri, Pegah Tavakkolkhah, Lukas Windhager, Ralf Zimmer
2012 J jnl
Rigorous assessment of gene set enrichment tests.
Bioinform.
Haroon Naeem, Ralf Zimmer, Pegah Tavakkolkhah, Robert Küffner
2011 B conf
Experiment Specific Expression Patterns.
RECOMB
Tobias Petri, Robert Küffner, Ralf Zimmer
2011 J jnl
Experiment Specific Expression Patterns.
J. Comput. Biol.
Tobias Petri, Robert Küffner, Ralf Zimmer
2011 J jnl
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems.
Bioinform.
Ludwig Geistlinger, Gergely Csaba, Robert Küffner, Nicola J. Mulder, Ralf Zimmer
2010 J jnl
miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature.
BMC Bioinform.
Haroon Naeem, Robert Küffner, Gergely Csaba, Ralf Zimmer
2009 J jnl
Algorithmische Systembiologie mit Petrinetzen - Von qualitativen zu quantitativen Systemmodellen.
Inform. Spektrum
Fabian Birzele, Gergely Csaba, Florian Erhard, Caroline C. Friedel, Robert Küffner, Tobias Petri, Lukas Windhager, Ralf Zimmer
2008 J jnl
ProSAS: a database for analyzing alternative splicing in the context of protein structures.
Nucleic Acids Res.
Fabian Birzele, Robert Küffner, Franziska Meier, Florian Oefinger, Christian Potthast, Ralf Zimmer
2007 J jnl
RelEx - Relation extraction using dependency parse trees.
Bioinform.
Katrin Fundel, Robert Küffner, Ralf Zimmer
2006 — conf
Characterization of Protein Interactions.
German Conference on Bioinformatics
Robert Küffner, Timo Duchrow, Katrin Fundel, Ralf Zimmer
2006 J jnl
Reliable gene signatures for microarray classification: assessment of stability and performance.
Bioinform.
Chad A. Davis, Fabian Gerick, Volker Hintermair, Caroline C. Friedel, Katrin Fundel, Robert Küffner, Ralf Zimmer
2005 — conf
Data Processing Effects on the Interpretation of Microarray Gene Expression Experiments.
German Conference on Bioinformatics
Katrin Fundel, Robert Küffner, Thomas Aigner, Ralf Zimmer
2005 — conf
Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts.
ECCB/JBI
Robert Küffner, Katrin Fundel, Ralf Zimmer
2001 J jnl
Executable Petri net models for the analysis of metabolic pathways.
Int. J. Softw. Tools Technol. Transf.
Hartmann J. Genrich, Robert Küffner, Klaus Voss
2000 A conf
Analysis of Gene Expression Data with Pathway Scores.
ISMB
Alexander Zien, Robert Küffner, Ralf Zimmer, Thomas Lengauer
2000 J jnl
Pathway analysis in metabolic databases via differential metabolic display (DMD).
Bioinform.
Robert Küffner, Ralf Zimmer, Thomas Lengauer
1999 — conf
Pathway analysis in metabolic databases via differetial metabolic display (DMD).
German Conference on Bioinformatics
Robert Küffner, Ralf Zimmer, Thomas Lengauer