Robert Giegerich

102 papers A* 2A 5B 5C 3Misc 2Journal 58Unranked 23
YearRankTypeTitle / Venue / Authors
2017 J jnl
The BRaliBase dent - a tale of benchmark design and interpretation.
Briefings Bioinform.
Benedikt Löwes, Cédric Chauve, Yann Ponty, Robert Giegerich
2016 J jnl
Integrating Pareto Optimization into Dynamic Programming.
Algorithms
Thomas Gatter, Robert Giegerich, Cédric Saule
2015 J jnl
Ambivalent covariance models.
BMC Bioinform.
Stefan Janssen, Robert Giegerich
2015 J jnl
Pareto optimization in algebraic dynamic programming.
Algorithms Mol. Biol.
Cédric Saule, Robert Giegerich
2015 J jnl
The RNA shapes studio.
Bioinform.
Stefan Janssen, Robert Giegerich
2014 — ed.
German conference on bioinformatics 2014, September 28 - October 1, 2014, Bielefeld, Germany
GCB
Robert Giegerich, Ralf Hofestädt, Tim W. Nattkemper
2014 J jnl
Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems.
Algorithms
Robert Giegerich, Hélène Touzet
2014 — conf
Observations on the Feasibility of Exact Pareto Optimization.
CMSR@ECCB
Cédric Saule, Robert Giegerich
2014 J jnl
Yield grammar analysis and product optimization in a domain-specific language for dynamic programming.
Sci. Comput. Program.
Georg Sauthoff, Robert Giegerich
2013 — conf
Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment.
GCB
Benedikt Löwes, Robert Giegerich
2013 J jnl
Bellman's GAP - a language and compiler for dynamic programming in sequence analysis.
Bioinform.
Georg Sauthoff, Mathias Möhl, Stefan Janssen, Robert Giegerich
2013 J jnl
Forest alignment with affine gaps and anchors, applied in RNA structure comparison.
Theor. Comput. Sci.
Stefanie Schirmer, Robert Giegerich
2012 J jnl
Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package.
BMC Bioinform.
Mohamed El-Kalioby, Mohamed Abouelhoda, Jan Krüger, Robert Giegerich, Alexander Sczyrba, Dennis P. Wall, Peter J. Tonellato
2011 C conf
Bellman's GAP: a declarative language for dynamic programming.
PPDP
Georg Sauthoff, Stefan Janssen, Robert Giegerich
2011 J jnl
Conveyor: a workflow engine for bioinformatic analyses.
Bioinform.
Burkhard Linke, Robert Giegerich, Alexander Goesmann
2011 B conf
Forest Alignment with Affine Gaps and Anchors.
CPM
Stefanie Schirmer, Robert Giegerich
2011 J jnl
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction.
BMC Bioinform.
Stefan Janssen, Christian Schudoma, Gerhard Steger, Robert Giegerich
2011 J jnl
Semantics and Ambiguity of Stochastic RNA Family Models.
IEEE ACM Trans. Comput. Biol. Bioinform.
Robert Giegerich, Christian Höner zu Siederdissen
2011 — conf
Yield grammar analysis in the Bellman's GAP compiler.
LDTA
Robert Giegerich, Georg Sauthoff
2010 J jnl
Analyzing ambiguity of context-free grammars.
Sci. Comput. Program.
Claus Brabrand, Robert Giegerich, Anders Møller
2010 J jnl
Faster computation of exact RNA shape probabilities.
Bioinform.
Stefan Janssen, Robert Giegerich
2010 J jnl
Fine-tuning structural RNA alignments in the twilight zone.
BMC Bioinform.
Andreas Bremges, Stefanie Schirmer, Robert Giegerich
2010 C conf
Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs.
WABI
Corinna Theis, Stefan Janssen, Robert Giegerich
2009 J jnl
Alignment of Minisatellite Maps Based on Run-Length Encoding Scheme.
J. Bioinform. Comput. Biol.
Mohamed Ibrahim Abouelhoda, Robert Giegerich, Behshad Behzadi, Jean-Marc Steyaert
2009 — conf
GPU Parallelization of Algebraic Dynamic Programming.
PPAM (2)
Peter Steffen, Robert Giegerich, Mathieu Giraud
2009 J jnl
Significant speedup of database searches with HMMs by search space reduction with PSSM family models.
Bioinform.
Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz
2008 B conf
Alignment of Minisatellite Maps: A Minimum Spanning Tree-based Approach.
APBC
Mohamed Ibrahim Abouelhoda, Robert Giegerich, Behshad Behzadi, Jean-Marc Steyaert
2008 J jnl
Efficient computation of absent words in genomic sequences.
BMC Bioinform.
Julia Herold, Stefan Kurtz, Robert Giegerich
2008 J jnl
GeneFisher-P: variations of GeneFisher as processes in Bio-jETI.
BMC Bioinform.
Anna-Lena Lamprecht, Tiziana Margaria, Bernhard Steffen, Alexander Sczyrba, Sven Hartmeier, Robert Giegerich
2008 J jnl
Shape based indexing for faster search of RNA family databases.
BMC Bioinform.
Stefan Janssen, Jens Reeder, Robert Giegerich
2008 J jnl
The BREW workshop series: a stimulating experience in PhD education.
Briefings Bioinform.
Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron
2008 J jnl
Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server.
Briefings Bioinform.
Alexander Sczyrba, Susanne Konermann, Robert Giegerich
2007 C conf
Analyzing Ambiguity of Context-Free Grammars.
CIAA
Claus Brabrand, Robert Giegerich, Anders Møller
2007 — conf
Locomotif: from graphical motif description to RNA motif search.
ISMB/ECCB (Supplement of Bioinformatics)
Janina Reeder, Jens Reeder, Robert Giegerich
2007 J jnl
pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows.
Nucleic Acids Res.
Jens Reeder, Peter Steffen, Robert Giegerich
2006 B conf
A graphical programming system for molecular motif search.
GPCE
Janina Reeder, Robert Giegerich
2006 J jnl
Calculating PSSM probabilities with lazy dynamic programming.
J. Funct. Program.
Ketil Malde, Robert Giegerich
2006 Misc conf
Challenges in the compilation of a domain specific language for dynamic programming.
SAC
Robert Giegerich, Peter Steffen
2006 J jnl
Correction: versatile and declarative dynamic programming using pair algebras.
BMC Bioinform.
Peter Steffen, Robert Giegerich
2006 J jnl
Fast index based algorithms and software for matching position specific scoring matrices.
BMC Bioinform.
Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz
2006 J jnl
GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.
Bioinform.
Wolfgang Gerlach, Robert Giegerich
2006 J jnl
RNAshapes: an integrated RNA analysis package based on abstract shapes.
Bioinform.
Peter Steffen, Björn Voß, Marc Rehmsmeier, Jens Reeder, Robert Giegerich
2006 J jnl
Table design in dynamic programming.
Inf. Comput.
Peter Steffen, Robert Giegerich
2006 J jnl
XML schemas for common bioinformatic data types and their application in workflow systems.
BMC Bioinform.
Philipp N. Seibel, Jan Krüger, Sven Hartmeier, Knut Schwarzer, Kai Löwenthal, Henning Mersch, Thomas Dandekar, Robert Giegerich
2005 J jnl
Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
Bioinform.
Jens Reeder, Robert Giegerich
2005 J jnl
Effective ambiguity checking in biosequence analysis.
BMC Bioinform.
Janina Reeder, Peter Steffen, Robert Giegerich
2005 J jnl
Versatile and declarative dynamic programming using pair algebras.
BMC Bioinform.
Peter Steffen, Robert Giegerich
2004 J jnl
A comprehensive comparison of comparative RNA structure prediction approaches.
BMC Bioinform.
Paul P. Gardner, Robert Giegerich
2004 J jnl
A discipline of dynamic programming over sequence data.
Sci. Comput. Program.
Robert Giegerich, Carsten Meyer, Peter Steffen
2004 J jnl
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics.
BMC Bioinform.
Jens Reeder, Robert Giegerich
2004 J jnl
Evaluating the predictability of conformational switching in RNA.
Bioinform.
Björn Voss, Carsten Meyer, Robert Giegerich
2004 J jnl
GenAlyzer: interactive visualization of sequence similarities between entire genomes.
Bioinform.
Jomuna V. Choudhuri, Chris Schleiermacher, Stefan Kurtz, Robert Giegerich
2004 J jnl
Genlight: Interactive high-throughput sequence analysis and comparative genomics.
J. Integr. Bioinform.
Michael Beckstette, Jens T. Mailänder, Richard J. Marhöfer, Alexander Sczyrba, Enno Ohlebusch, Robert Giegerich, Paul M. Selzer
2004 — ed.
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, Germany, October 4-6, 2004
German Conference on Bioinformatics
Robert Giegerich, Jens Stoye
2004 J jnl
Pure Multiple RNA Secondary Structure Alignments: A Progressive Profile Approach.
IEEE ACM Trans. Comput. Biol. Bioinform.
Matthias Höchsmann, Björn Voss, Robert Giegerich
2004 J jnl
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.
Nucleic Acids Res.
Jan Krüger, Alexander Sczyrba, Stefan Kurtz, Robert Giegerich
2003 J jnl
Efficient implementation of lazy suffix trees.
Softw. Pract. Exp.
Robert Giegerich, Stefan Kurtz, Jens Stoye
2003 — conf
Local Similarity in RNA Secondary Structures.
CSB
Matthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz
2003 — conf
Prediction of conformational switching in RNA.
German Conference on Bioinformatics
Björn Voß, Robert Giegerich
2003 J jnl
RNA-related tools on the Bielefeld Bioinformatics Server.
Nucleic Acids Res.
Alexander Sczyrba, Jan Krüger, Henning Mersch, Stefan Kurtz, Robert Giegerich
2002 — conf
Algebraic Dynamic Programming.
AMAST
Robert Giegerich, Carsten Meyer
2002 B conf
Implementing Algebraic Dynamic Programming in the Functional and the Imperative Programming Paradigm.
MPC
Robert Giegerich, Peter Steffen
2002 J jnl
PathFinder: reconstruction and dynamic visualization of metabolic pathways.
Bioinform.
Alexander Goesmann, Martin Haubrock, Folker Meyer, Jörn Kalinowski, Robert Giegerich
2002 — conf
Towards A Discipline of Dynamic Programming.
GI Jahrestagung
Robert Giegerich
2001 J jnl
Minimum conflict: a divide-and-conquer approach to phylogeny estimation.
Bioinform.
Georg Fuellen, Johann-Wolfgang Wägele, Robert Giegerich
2001 — conf
Reducing the Conformation Space in RNA Structure Prediction.
German Conference on Bioinformatics
Dirk Evers, Robert Giegerich
2000 J jnl
A systematic approach to dynamic programming in bioinformatics.
Bioinform.
Robert Giegerich
2000 A conf
Computation and Visualization of Degenerate Repeats in Complete Genomes.
ISMB
Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich
2000 B conf
Explaining and Controlling Ambiguity in Dynamic Programming.
CPM
Robert Giegerich
1999 — conf
Efficient Implementation of Lazy Suffix Trees.
WAE
Robert Giegerich, Stefan Kurtz, Jens Stoye
1999 Misc conf
Prediction and Visualization of Structural Switches in RNA.
Pacific Symposium on Biocomputing
Robert Giegerich, Dirk Haase, Marc Rehmsmeier
1999 J jnl
RNA movies: visualizing RNA secondary structure spaces.
Bioinform.
Dirk Evers, Robert Giegerich
1999 J jnl
Semantic Matching for Left-Linear Convergent Rewrite Systems
J. Funct. Log. Program.
Bernd Bütow, Robert Giegerich, Enno Ohlebusch, Stephan Thesing
1998 — conf
ViSeL - An interactive course in DNA Sequencing.
Workshop Multimedia-Systeme, GI Jahrestagung
Robert Giegerich, Dieter Lorenz
1997 J jnl
From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction.
Algorithmica
Robert Giegerich, Stefan Kurtz
1997 A conf
RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation.
ISMB
Henning Hermjakob, Robert Giegerich, Walter Arnold
1997 — conf
RNA Movies: Visualizing RNA secondary structure spaces.
German Conference on Bioinformatics
Dirk Evers, Robert Giegerich
1996 A conf
GeneFisher-Software Support for the Detection of Postulated Genes.
ISMB
Robert Giegerich, Folker Meyer, Chris Schleiermacher
1996 — conf
Sequence Analysis with Distributed Resources: A WWW-Based Course.
German Conference on Bioinformatics
Robert Giegerich, Christian Büschking
1996 J jnl
Sequenzanalyse mit verteilten Ressourcen: Ein WWW-basierter Kurs.
Informationstechnik Tech. Inform.
Christian Büschking, Robert Giegerich
1995 J jnl
A Comparison of Imperative and Purely Functional Suffix Tree Constructions.
Sci. Comput. Program.
Robert Giegerich, Stefan Kurtz
1995 — conf
A New Strategy for Semantic Matching
PLILP
Bernd Bütow, Robert Giegerich, Enno Ohlebusch, Stephan Thesing
1994 A conf
Suffix Trees in the Functional Programming Paradigm.
ESOP
Robert Giegerich, Stefan Kurtz
1992 — ed.
Code Generation - Concepts, Tools, Techniques, Workshop on Code Generation, Dagstuhl, Germany, 20-24 May 1991
Code Generation
Robert Giegerich, Susan L. Graham
1991 J jnl
An Implicit Representation of Infinite Sequences of Terms.
Bull. EATCS
Robert Giegerich, Enno Ohlebusch
1991 — conf
Considerate Code Selection.
Code Generation
Robert Giegerich
1991 — conf
Der Studiengang Naturwissenschaftliche Informatik an der Universität Bielefeld.
Physik und Informatik
Robert Giegerich, Willi Schepper
1990 J jnl
Code Selection by Inversion of Order-Sorted Derivors.
Theor. Comput. Sci.
Robert Giegerich
1990 A* conf
On the Structure of Verifiable Code Generator Specifications.
PLDI
Robert Giegerich
1988 A conf
Code Selection Techniques: Pattern Matching, Tree Parsing, and Inversion of Derivors.
ESOP
Robert Giegerich, Karl Schmal
1988 J jnl
Composition and Evaluation of Attribute Coupled Grammars.
Acta Informatica
Robert Giegerich
1987 J jnl
A note on termination in combinatiosn of heterogeneous term rewriting systems.
Bull. EATCS
Harald Ganzinger, Robert Giegerich
1985 — conf
Logic specification of code generation techniques.
Programs as Data Objects
Robert Giegerich
1984 — conf
Attribute coupled grammars.
SIGPLAN Symposium on Compiler Construction
Harald Ganzinger, Robert Giegerich
1983 J jnl
A Formal Framework for the Derivation of Machine-Specific Optimizers.
ACM Trans. Program. Lang. Syst.
Robert Giegerich
1982 — conf
A Formal Model of Instruction Set Semantics.
Fachtagung über Programmiersprachen
Robert Giegerich
1982 — conf
A Truly Generative Semantics-Directed Compiler Generator.
SIGPLAN Symposium on Compiler Construction
Harald Ganzinger, Robert Giegerich, Ulrich Möncke, Reinhard Wilhelm
1982 A* conf
Automatic Generation of Machine Specific Code Optimizers.
POPL
Robert Giegerich
1981 — —
Automatische Erzeugung von Maschinencode-Optimierern.
Robert Giegerich
1981 — conf
Invariance of Approximate Semantics with Respect to Program Transformations.
GI Jahrestagung
Robert Giegerich, Ulrich Möncke, Reinhard Wilhelm
1978 J jnl
Counter-One-Pass Features in One-Pass Compilation: A Formalization Using Attribute Grammars.
Inf. Process. Lett.
Robert Giegerich, Reinhard Wilhelm
1977 — conf
Implementierbarkeit attributierter Grammatiken.
GI Jahrestagung
Robert Giegerich, Reinhard Wilhelm